RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA450343" and tax_phylum = "Brachiopoda"

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tax_superkingdom 1

tax_phylum 1

  • Brachiopoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA450343 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8092227 8092227 PRJNA450343_P_NODE_1507_length_452_cov_19.429280_g1439_i0 PRJNA450343 1507 452 19.42928 87.8203456 Lingula anatina 7574 Brachiopoda other_Eukaryota 291 8.53e-74   NTclustered gi|1351492704|ref|XM_013549543.2| 7574 g1439 i0 80.357 9.76769911504425 392 69 86 8 54 440 107 495 PREDICTED: Lingula anatina 40S ribosomal protein S20 (LOC106169898), mRNA blastn 4415 291 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
17016405 17016405 PRJNA450343_P_NODE_914_length_593_cov_10.568015_g850_i0 PRJNA450343 914 593 10.568015 62.66832895 Lingula anatina 7574 Brachiopoda other_Eukaryota 486 1.3599999999999999e-132   NTclustered gi|919031420|ref|XM_013543873.1| 7574 g850 i0 81.913 9.27487352445194 575 104 97 0 8 582 614 40 PREDICTED: Lingula anatina 40S ribosomal protein S7 (LOC106165617), mRNA blastn 5500 486 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;