RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA450343" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA450343 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1713900 1713900 PRJNA450343_P_NODE_12242_length_164_cov_0.886957_g12174_i0 PRJNA450343 12242 164 0.886957 1.45460948 Bacillaria paxillifer 3003 SAR_Eukaryotes SAR_Eukaryotes 241 2.72e-59   NTclustered gi|2202538966|gb|OM891872.1| 3003 g12174 i0 93.252 81.609756097561 163 11 99 0 2 164 4698 4536 Bacillaria paxillifer small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13384 241 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Bacillaria Bacillaria paxillifer
18290681 18290681 PRJNA450343_P_NODE_11935_length_165_cov_0.879310_g11867_i0 PRJNA450343 11935 165 0.87931 1.4508615 Naviculales sp. 2126271 SAR_Eukaryotes SAR_Eukaryotes 289 9.66e-74   NTclustered gi|2633519340|gb|OR805654.1| 2126271 g11867 i0 98.182 197.878787878788 165 3 100 0 1 165 121253 121417 Naviculales sp. strain SZCZO2114 plastid, complete genome blastn 32650 289 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales     Naviculales sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;