RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA450343" and tax_clade = "Sar"

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tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA450343 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1713900 1713900 PRJNA450343_P_NODE_12242_length_164_cov_0.886957_g12174_i0 PRJNA450343 12242 164 0.886957 1.45460948 Bacillaria paxillifer 3003 SAR_Eukaryotes SAR_Eukaryotes 241 2.72e-59   NTclustered gi|2202538966|gb|OM891872.1| 3003 g12174 i0 93.252 81.609756097561 163 11 99 0 2 164 4698 4536 Bacillaria paxillifer small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13384 241 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Bacillaria Bacillaria paxillifer
6816851 6816851 PRJNA450343_P_NODE_8406_length_187_cov_1.471014_g8338_i0 PRJNA450343 8406 187 1.471014 2.75079618 Chlorellidium tetrabotrys 243652 SAR_Eukaryotes SAR_Eukaryotes 324 3.07e-84   NTclustered gi|46020003|emb|AJ580949.1| 243652 g8338 i0 100 91.4812834224599 175 0 94 0 12 186 1 175 Chlorellidium tetrabotrys partial 18S rRNA gene, strain SAG 5.90 blastn 17107 324 1 Eukaryota Sar     Xanthophyceae Mischococcales Botryochloridaceae Chlorellidium Chlorellidium tetrabotrys
8745490 8745490 PRJNA450343_P_NODE_2967_length_312_cov_2.631179_g2899_i0 PRJNA450343 2967 312 2.631179 8.20927848 root 1 Root_unresolved Root_unresolved 569 6.509999999999998e-158   NTclustered gi|291495600|gb|GU823227.1| 152704 g2899 i0 99.679 100.019230769231 312 0 100 1 1 312 579 269 Uncultured stramenopile clone A93F14RM1E05 18S ribosomal RNA gene, partial sequence blastn 31206 571 0.996497373029772 Eukaryota Sar             uncultured stramenopile
9366941 9366941 PRJNA450343_P_NODE_11268_length_166_cov_0.871795_g11200_i0 PRJNA450343 11268 166 0.871795 1.4471797 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 189 1.0199999999999999e-43   NTclustered gi|146161228|ref|XM_971777.2| 312017 g11200 i0 87.273 0.993975903614458 165 21 99 0 1 165 94 258 Tetrahymena thermophila SB210 ribosomal protein L11, amine-terminal domain protein partial mRNA blastn 165 189 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
13192589 13192589 PRJNA450343_P_NODE_11791_length_165_cov_0.879310_g11723_i0 PRJNA450343 11791 165 0.87931 1.4508615 Cryptosporidium viatorum 1176757 SAR_Eukaryotes SAR_Eukaryotes 113 6.240000000000001e-21   NTclustered gi|441431303|gb|JX978273.1| 1176757 g11723 i0 98.438 16.6484848484848 64 1 59 0 1 64 1887 1824 Cryptosporidium viatorum isolate Swec025 70 kDa heat shock protein (HSP70) gene, partial cds blastn 2747 113 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium viatorum
18290681 18290681 PRJNA450343_P_NODE_11935_length_165_cov_0.879310_g11867_i0 PRJNA450343 11935 165 0.87931 1.4508615 Naviculales sp. 2126271 SAR_Eukaryotes SAR_Eukaryotes 289 9.66e-74   NTclustered gi|2633519340|gb|OR805654.1| 2126271 g11867 i0 98.182 197.878787878788 165 3 100 0 1 165 121253 121417 Naviculales sp. strain SZCZO2114 plastid, complete genome blastn 32650 289 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales     Naviculales sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;