RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA450343" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA450343 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4266088 4266088 PRJNA450343_P_NODE_5524_length_226_cov_1.711864_g5456_i0 PRJNA450343 5524 226 1.711864 3.86881264 Candidatus Brocadia pituitae 2608983 Bacteria Bacteria 65.8 2.58e-6   NTclustered gi|1996211272|dbj|AP021856.1| 2608983 g5456 i0 100 5.72566371681416 35 0 15 0 1 35 591991 592025 Candidatus Brocadia pituitae DNA, complete genome blastn 1294 65.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales Candidatus Brocadiaceae Candidatus Brocadia Candidatus Brocadia pituitae
5542806 5542806 PRJNA450343_P_NODE_10405_length_168_cov_1.714286_g10337_i0 PRJNA450343 10405 168 1.714286 2.88000048 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 200 4.76e-47   NTclustered gi|2874253853|emb|OY969909.1| 1914239 g10337 i0 89.937 40.5416666666667 159 11 93 5 1 156 2003202 2003046 MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 blastn 6811 200 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
20218712 20218712 PRJNA450343_P_NODE_11016_length_167_cov_0.864407_g10948_i0 PRJNA450343 11016 167 0.864407 1.44355969 Singulisphaera 466152 Bacteria Bacteria 207 2.83e-49   NTclustered gi|485099129|ref|NR_102524.1| 466153 g10948 i0 91.391 122.149700598802 151 13 90 0 1 151 680 530 Singulisphaera acidiphila strain MOB10 23S ribosomal RNA gene, complete sequence blastn 20399 207 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Singulisphaera Singulisphaera acidiphila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;