RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA448207" and tax_phylum = "Pisuviricota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Pisuviricota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA448207 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2989516 2989516 PRJNA448207_P_NODE_3_length_7211_cov_12.015130_g2_i0 PRJNA448207 3 7211 12.01513 866.4110243 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 2477 0   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g2 i0 91.755 0.651920676743864 1783 142 65 5 5426 7205 5329 7109 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 4701 2477 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
4265915 4265915 PRJNA448207_P_NODE_4_length_7204_cov_19.261394_g2_i1 PRJNA448207 4 7204 19.261394 1387.59082376 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 2952 0   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g2 i1 96.575 0.667684619655747 1781 57 67 4 5426 7204 5329 7107 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 4810 2952 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
15741634 15741634 PRJNA448207_S_NODE_2373_length_294_cov_1.208145_g2362_i0 PRJNA448207 2373 294 1.208145 3.5519463 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 187 7.169999999999998e-43   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g2362 i0 90.278 0.489795918367347 144 12 49 2 151 293 5329 5471 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 144 187 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
15741644 15741644 PRJNA448207_S_NODE_773_length_466_cov_1.175573_g762_i0 PRJNA448207 773 466 1.175573 5.47817018 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 684 0   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g762 i0 93.133 1 466 32 100 0 1 466 6143 6608 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 466 684 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
23391228 23391228 PRJNA448207_S_NODE_3879_length_243_cov_1.023529_g3868_i0 PRJNA448207 3879 243 1.023529 2.48717547 Betacoronavirus pandemicum 3418604 Viruses Viruses 99 2.77e-16   NTclustered gi|2165834218|emb|OV195924.1| 2697049 g3868 i0 90.789 25.1028806584362 76 3 30 1 119 190 129 54 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 6100 99 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
24664772 24664772 PRJNA448207_P_NODE_15360_length_325_cov_1.587302_g15197_i0 PRJNA448207 15360 325 1.587302 5.1587315 Polycipiviridae sp. 2496155 Viruses Viruses 52.8 0.031   NTclustered gi|2756421824|gb|PP744841.1| 2496155 g15197 i0 90.244 0.126153846153846 41 3 12 1 261 300 9211 9171 MAG: Polycipiviridae sp. isolate 086_167342 genomic sequence blastn 41 52.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Polycipiviridae   Polycipiviridae sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;