RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA448207" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA448207 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2989445 2989445 PRJNA448207_P_NODE_29363_length_246_cov_0.890173_g29200_i0 PRJNA448207 29363 246 0.890173 2.18982558 Mycoplasmopsis pulmonis 2107 Bacteria Bacteria 455 1.4500000000000002e-123   NTclustered gi|1563796921|emb|LR215008.1| 2107 g29200 i0 100 2.02845528455285 246 0 100 0 1 246 217891 217646 Mycoplasma pulmonis strain NCTC10139 genome assembly, chromosome: 1 blastn 499 455 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis pulmonis
10642630 10642630 PRJNA448207_P_NODE_27149_length_249_cov_0.875000_g26986_i0 PRJNA448207 27149 249 0.875 2.17875 Mycoplasmopsis pulmonis 2107 Bacteria Bacteria 455 1.47e-123   NTclustered gi|1563796921|emb|LR215008.1| 2107 g26986 i0 99.598 2 249 1 100 0 1 249 208515 208763 Mycoplasma pulmonis strain NCTC10139 genome assembly, chromosome: 1 blastn 498 455 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis pulmonis
18290600 18290600 PRJNA448207_P_NODE_6335_length_480_cov_1.312039_g6173_i0 PRJNA448207 6335 480 1.312039 6.2977872 Mycoplasmopsis pulmonis 2107 Bacteria Bacteria 826 0   NTclustered gi|1563796921|emb|LR215008.1| 2107 g6173 i0 97.718 171.960416666667 482 7 100 4 1 480 799817 800296 Mycoplasma pulmonis strain NCTC10139 genome assembly, chromosome: 1 blastn 82541 826 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis pulmonis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;