RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA448207" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA448207 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1713869 1713869 PRJNA448207_S_NODE_3602_length_247_cov_1.965517_g3591_i0 PRJNA448207 3602 247 1.965517 4.85482699 Bradybaena similaris 145626 Mollusca Mollusca 58.4 4.8e-4   NTclustered gi|2912988862|dbj|AP039593.1| 145626 g3591 i0 100 0.502024291497976 31 0 13 0 124 154 4320819 4320849 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 12, sequence blastn 124 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
6816709 6816709 PRJNA448207_P_NODE_8286_length_425_cov_2.823864_g8124_i0 PRJNA448207 8286 425 2.823864 12.001422 Mollusca environmental sample 653389 Mollusca Mollusca 296 1.71e-75   NTclustered gi|156254524|gb|EF528299.1| 653389 g8124 i0 80.562 52.1717647058824 427 48 100 20 1 425 980 587 Uncultured mollusc isolate XenLSU7 28S ribosomal RNA gene, partial sequence blastn 22173 296 1 Eukaryota Opisthokonta Metazoa Mollusca         Mollusca environmental sample
9366915 9366915 PRJNA448207_S_NODE_2248_length_300_cov_1.674009_g2237_i0 PRJNA448207 2248 300 1.674009 5.022027 Littorina saxatilis 31220 Mollusca Mollusca 187 7.33e-43   NTclustered gi|2868678165|ref|XM_070323641.1| 31220 g2237 i0 78.425 88.9533333333333 292 60 97 3 3 292 1344 1634 PREDICTED: Littorina saxatilis spectrin beta chain-like (LOC138952069), transcript variant X1, mRNA blastn 26686 187 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Littorinimorpha Littorinidae Littorina Littorina saxatilis
11917238 11917238 PRJNA448207_P_NODE_11790_length_363_cov_1.327586_g11628_i0 PRJNA448207 11790 363 1.327586 4.81913718 Bradybaena similaris 145626 Mollusca Mollusca 58.4 7.4e-4   NTclustered gi|2912988862|dbj|AP039593.1| 145626 g11628 i0 100 0.341597796143251 31 0 9 0 243 273 4320849 4320819 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 12, sequence blastn 124 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
14467162 14467162 PRJNA448207_P_NODE_12392_length_356_cov_1.088339_g12229_i0 PRJNA448207 12392 356 1.088339 3.87448684 Argopecten purpuratus 228297 Mollusca Mollusca 658 0   NTclustered gi|1188496355|gb|KY321561.1| 228297 g12229 i0 100 71.8370786516854 356 0 100 0 1 356 7687 7332 Argopecten purpuratus mitochondrion, complete genome blastn 25574 658 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Argopecten Argopecten purpuratus
22115172 22115172 PRJNA448207_P_NODE_18638_length_298_cov_1.128889_g18475_i0 PRJNA448207 18638 298 1.128889 3.36408922 Argopecten purpuratus 228297 Mollusca Mollusca 540 4.85e-149   NTclustered gi|359291823|gb|JN848510.1| 228297 g18475 i0 99.331 74.0503355704698 299 1 100 1 1 298 146 444 Argopecten purpuratus haplotype H10 16S ribosomal RNA gene, partial sequence; mitochondrial blastn 22067 540 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Argopecten Argopecten purpuratus
23390745 23390745 PRJNA448207_P_NODE_15239_length_326_cov_2.430830_g15076_i0 PRJNA448207 15239 326 2.43083 7.9245058 Littorina saxatilis 31220 Mollusca Mollusca 198 3.72e-46   NTclustered gi|2868688207|ref|XM_070347684.1| 31220 g15076 i0 84.772 45.2085889570552 197 30 60 0 130 326 828 632 PREDICTED: Littorina saxatilis protein yippee-like 1 (LOC138975036), transcript variant X1, mRNA blastn 14738 198 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Littorinimorpha Littorinidae Littorina Littorina saxatilis
25318413 25318413 PRJNA448207_P_NODE_18680_length_298_cov_0.897778_g18517_i0 PRJNA448207 18680 298 0.897778 2.67537844 Metazoa 33208 Mollusca Mollusca 54.7 0.008   NTclustered gi|2868609207|ref|XR_011456361.1| 31220 g18517 i0 92.308 3.14765100671141 39 2 13 1 227 264 1357 1395 PREDICTED: Littorina saxatilis origin recognition complex subunit 6-like (LOC138969046), transcript variant X2, misc_RNA blastn 938 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Littorinimorpha Littorinidae Littorina Littorina saxatilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;