RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA448207" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA448207 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2989635 2989635 PRJNA448207_S_NODE_523_length_543_cov_1.802128_g512_i0 PRJNA448207 523 543 1.802128 9.78555504 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.015   NTclustered gi|1472915933|ref|XM_026338472.1| 88456 g512 i0 100 0.0534069981583794 29 0 5 0 185 213 911 883 PREDICTED: Cyclospora cayetanensis uncharacterized LOC34622843 (LOC34622843), mRNA blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
5542385 5542385 PRJNA448207_P_NODE_19145_length_294_cov_1.045249_g18982_i0 PRJNA448207 19145 294 1.045249 3.07303206 Eimeria mitis 44415 SAR_Eukaryotes SAR_Eukaryotes 80.5 1.25e-10   NTclustered gi|916497858|ref|XM_013494305.1| 44415 g18982 i0 100 1.42517006802721 43 0 15 0 252 294 345 387 Eimeria mitis uncharacterized protein (EMH_0029470), partial mRNA blastn 419 80.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis
9366917 9366917 PRJNA448207_S_NODE_2448_length_290_cov_1.755760_g2437_i0 PRJNA448207 2448 290 1.75576 5.091704 Eimeria acervulina 5801 SAR_Eukaryotes SAR_Eukaryotes 62.1 4.46e-5   NTclustered gi|915008493|ref|XM_013395157.1| 5801 g2437 i0 93.023 1.89655172413793 43 1 14 2 157 197 8246 8204 Eimeria acervulina protein kinase (incomplete catalytic triad), putative partial mRNA blastn 550 62.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina
18290577 18290577 PRJNA448207_P_NODE_5115_length_531_cov_2.921397_g4956_i0 PRJNA448207 5115 531 2.921397 15.51261807 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.014   NTclustered gi|1472915933|ref|XM_026338472.1| 88456 g4956 i0 100 0.0546139359698682 29 0 5 0 155 183 911 883 PREDICTED: Cyclospora cayetanensis uncharacterized LOC34622843 (LOC34622843), mRNA blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
20840613 20840613 PRJNA448207_S_NODE_3037_length_265_cov_1.203125_g3026_i0 PRJNA448207 3037 265 1.203125 3.18828125 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.007   NTclustered gi|124506116|ref|XM_001351620.1| 36329 g3026 i0 100 0.109433962264151 29 0 11 0 180 208 3142 3114 Plasmodium falciparum 3D7 phosphatidylinositol 4-kinase (PF3D7_0509800), partial mRNA blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;