RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA448207" and tax_kingdom = "Thermotogati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA448207 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4265761 4265761 PRJNA448207_P_NODE_25424_length_251_cov_0.865169_g25261_i0 PRJNA448207 25424 251 0.865169 2.17157419 Thermus brockianus 56956 Bacteria Bacteria 315 2.6299999999999998e-81   NTclustered gi|2199615985|dbj|AP025593.1| 56956 g25261 i0 89.516 43.2509960159363 248 26 99 0 1 248 1555000 1555247 Thermus brockianus SNM4-1 DNA, complete genome blastn 10856 315 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus brockianus
9366729 9366729 PRJNA448207_P_NODE_28708_length_247_cov_0.885057_g28545_i0 PRJNA448207 28708 247 0.885057 2.18609079 Deinococcus taeanensis 2737050 Bacteria Bacteria 326 1.19e-84   NTclustered gi|2105694697|gb|CP083456.1| 2737050 g28545 i0 90.947 158.951417004049 243 21 98 1 1 243 1472 1713 Deinococcus taeanensis strain TS293 plasmid p_TS293_2, complete sequence blastn 39261 326 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus taeanensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;