RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA448207" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 2 ✖

bioproject 1

  • PRJNA448207 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23391063 23391063 PRJNA448207_P_NODE_32239_length_242_cov_0.911243_g32076_i0 PRJNA448207 32239 242 0.911243 2.20520806 Nostocales cyanobacterium HT-58-2 1940762 Bacteria Bacteria 198 2.6499999999999997e-46   NTclustered gi|1199827411|gb|CP019636.1| 1940762 g32076 i0 81.405 1 242 45 100 0 1 242 5789452 5789211 Nostocales cyanobacterium HT-58-2 chromosome, complete genome blastn 242 198 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales     Nostocales cyanobacterium HT-58-2
24665215 24665215 PRJNA448207_S_NODE_660_length_495_cov_8.177725_g649_i0 PRJNA448207 660 495 8.177725 40.47973875 Kalymmatonema hyalinum 119533 Bacteria Bacteria 869 0   NTclustered gi|1280084616|gb|MF574178.1| 119533 g649 i0 98.384 294.379797979798 495 7 100 1 1 495 2597 3090 Scytonema hyalinum rrn type 2 operon, precursor RNA, transcribed leader region, and 16S ribosomal RNA genes, 16S-23S internal transcribed spacer, tRNA-Ile, tRNA-Ala, and 23S ribosomal RNA genes, 23S-5S internal transcribed spacer, and 5S ribosomal RNA gene, complete sequence blastn 145718 869 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Scytonemataceae Kalymmatonema Kalymmatonema hyalinum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;