RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA446034" and tax_phylum = "Pisuviricota"

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tax_superkingdom 1

tax_phylum 1

  • Pisuviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA446034 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5541907 5541907 PRJNA446034_S_NODE_285_length_649_cov_59.124183_g265_i0 PRJNA446034 285 649 59.124183 383.71594767 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 909 0   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g265 i0 92.081 0.992295839753467 644 50 99 1 6 649 7108 6466 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 644 909 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
21493818 21493818 PRJNA446034_S_NODE_5997_length_294_cov_29.805447_g5960_i0 PRJNA446034 5997 294 29.805447 87.62801418 Viruses 10239 Viruses Viruses 62.1 4.53e-5   NTclustered gi|2565362283|emb|OY635503.1| 2697049 g5960 i0 100 11.3571428571429 33 0 11 0 1 33 2241 2209 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 3339 62.1 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
23390245 23390245 PRJNA446034_S_NODE_115699_length_150_cov_1.982301_g115662_i0 PRJNA446034 115699 150 1.982301 2.9734515 Hobart nepovirus 2 2201293 Viruses Viruses 243 6.75e-60   NTclustered gi|1390040509|gb|MG995735.1| 2201293 g115662 i0 96.599 0.98 147 4 98 1 4 150 5575 5720 Hobart nepovirus 2 isolate TAS-3 nonstructural polyprotein gene, partial cds blastn 147 243 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Secoviridae Nepovirus Hobart nepovirus 2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;