RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA446034" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA446034 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11917127 11917127 PRJNA446034_S_NODE_7670_length_278_cov_5.439834_g7633_i0 PRJNA446034 7670 278 5.439834 15.12273852 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.026   NTclustered gi|2913000417|dbj|AP039607.1| 145626 g7633 i0 100 0.100719424460432 28 0 10 0 219 246 8953149 8953122 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 26, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
18289724 18289724 PRJNA446034_S_NODE_12835_length_248_cov_8.834123_g12798_i0 PRJNA446034 12835 248 8.834123 21.90862504 Lottia gigantea 225164 Mollusca Mollusca 99 2.84e-16   NTclustered gi|676429902|ref|XM_009047504.1| 225164 g12798 i0 83.654 0.737903225806452 104 17 42 0 23 126 513 616 Lottia gigantea hypothetical protein mRNA blastn 183 99 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lottiidae Lottia Lottia gigantea
22114695 22114695 PRJNA446034_S_NODE_30758_length_205_cov_4.214286_g30721_i0 PRJNA446034 30758 205 4.214286 8.6392863 Cepaea nemoralis 28835 Mollusca Mollusca 368 1.57e-97   NTclustered gi|514388879|gb|KC967173.1| 28835 g30721 i0 99.024 99.5707317073171 205 2 100 0 1 205 184 388 Cepaea nemoralis haplotype D11 16S ribosomal RNA gene, partial sequence; mitochondrial blastn 20412 368 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Helicidae Cepaea Cepaea nemoralis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;