RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA446034" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA446034 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
438296 438296 PRJNA446034_S_NODE_56161_length_178_cov_8.758865_g56124_i0 PRJNA446034 56161 178 8.758865 15.5907797 Acidobacteriota bacterium 1978231 Bacteria Bacteria 193 8.5e-45   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g56124 i0 86.592 31.8820224719101 179 19 99 4 1 176 3298366 3298190 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 5675 193 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
24664336 24664336 PRJNA446034_S_NODE_25300_length_214_cov_4.519774_g25263_i0 PRJNA446034 25300 214 4.519774 9.67231636 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 357 3.5699999999999996e-94   NTclustered gi|399532232|gb|JQ627516.1| 171953 g25263 i0 97.156 98.5467289719626 211 6 99 0 1 211 18 228 Uncultured Acidobacteria bacterium clone B1_6_1B_104 small subunit ribosomal RNA gene, partial sequence blastn 21089 357 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;