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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA446034" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 9 ✖

bioproject 1

  • PRJNA446034 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2988915 2988915 PRJNA446034_S_NODE_51123_length_182_cov_11.241379_g51086_i0 PRJNA446034 51123 182 11.241379 20.45930978 Pseudochlorella signiensis 173497 Plants Plants 274 3.03e-69   NTclustered gi|725650714|ref|NC_025529.1| 173497 g51086 i0 93.923 113.016483516484 181 11 99 0 2 182 150023 150203 Pabia signiensis culture-collection SAG:7.90 chloroplast, complete genome blastn 20569 274 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
11917101 11917101 PRJNA446034_S_NODE_72550_length_168_cov_2.282443_g72513_i0 PRJNA446034 72550 168 2.2824430000000002 3.83450424 Chloroidium ellipsoideum 63676 Plants Plants 248 1.68e-61   NTclustered gi|535783|dbj|D17810.1|CHLLSURRNA 63676 g72513 i0 93.413 97.3095238095238 167 11 99 0 2 168 110 276 Chlorella ellipsoidea gene for large subunit rRNA, with group-I self-splicing intron blastn 16348 248 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
13191712 13191712 PRJNA446034_S_NODE_23911_length_217_cov_2.366667_g23874_i0 PRJNA446034 23911 217 2.366667 5.13566739 Trebouxia lynnae 1825957 Plants Plants 374 3.6e-99   NTclustered gi|1812100161|ref|NC_045839.1| 1825957 g23874 i0 97.696 84.7188940092166 217 5 100 0 1 217 195691 195475 Trebouxia sp. TR9 chloroplast, partial genome blastn 18384 374 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
18289665 18289665 PRJNA446034_S_NODE_10175_length_261_cov_5.754464_g10138_i0 PRJNA446034 10175 261 5.754464 15.01915104 Nannochloris normandinae 926285 Plants Plants 483 7.12e-132   NTclustered gi|922575245|gb|JQ921007.1| 926285 g10138 i0 100 97.7892720306513 261 0 100 0 1 261 826 566 Nannochloris normandinae strain SAG 9.82 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 25523 483 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris normandinae
18289728 18289728 PRJNA446034_S_NODE_13155_length_247_cov_2.923810_g13118_i0 PRJNA446034 13155 247 2.92381 7.2218107 Coccomyxa subellipsoidea 248742 Plants Plants 158 4.6e-34   NTclustered gi|545366309|ref|XM_005648003.1| 574566 g13118 i0 79.654 15.1497975708502 231 38 94 7 3 233 2393 2614 Coccomyxa subellipsoidea C-169 V0/A0 complex, 116-kDa subunit of ATPase mRNA blastn 3742 158 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
19563975 19563975 PRJNA446034_S_NODE_27596_length_210_cov_4.572254_g27559_i0 PRJNA446034 27596 210 4.572254 9.6017334 Trebouxia sp. SL0000003 3350044 Plants Plants 132 2.3e-26   NTclustered gi|2917929625|emb|OZ234913.1| 3350044 g27559 i0 86.614 3.97619047619048 127 8 59 4 30 153 1311504 1311384 Trebouxia sp. SL0000003 genome assembly, chromosome: 8 blastn 835 132 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
19564209 19564209 PRJNA446034_S_NODE_83816_length_162_cov_2.752000_g83779_i0 PRJNA446034 83816 162 2.752 4.45824 uncultured Planophila 1586189 Plants Plants 289 9.44e-74   NTclustered gi|2515376631|gb|OR101488.1| 1586189 g83779 i0 98.765 92.2901234567901 162 2 100 0 1 162 1143 982 Uncultured Planophila clone SchF170815_mgcl52 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14951 289 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales     uncultured Planophila
20839610 20839610 PRJNA446034_S_NODE_10097_length_262_cov_1.875556_g10060_i0 PRJNA446034 10097 262 1.875556 4.91395672 Trebouxia sp. SL0000003 3350044 Plants Plants 313 9.93e-81   NTclustered gi|2917929689|emb|OZ234917.1| 3350044 g10060 i0 88.889 0.99618320610687 261 19 98 9 1 256 1719355 1719100 Trebouxia sp. SL0000003 genome assembly, chromosome: 12 blastn 261 313 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
22114751 22114751 PRJNA446034_S_NODE_4018_length_323_cov_5.122378_g3981_i0 PRJNA446034 4018 323 5.122378 16.54528094 Ulva compressa 63659 Plants Plants 268 2.7699999999999998e-67   NTclustered gi|2043344467|gb|MW353781.1| 63659 g3981 i0 86.345 100.743034055728 249 31 77 2 70 318 69276 69521 Ulva compressa isolate Uco3 plastid, complete genome blastn 32540 268 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva compressa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;