RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA446034" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA446034 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4265318 4265318 PRJNA446034_S_NODE_66204_length_172_cov_1.096296_g66167_i0 PRJNA446034 66204 172 1.096296 1.88562912 Trypanosoma rangeli 5698 Euglenozoa other_Eukaryota 73.1 1.11e-8   NTclustered gi|510034252|gb|KC544876.1| 5698 g66167 i0 95.556 7.47674418604651 45 2 26 0 124 168 327 283 Trypanosoma rangeli clone TR05740 60S acidic ribosomal protein P2 gene, complete cds blastn 1286 73.1 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma rangeli
8091187 8091187 PRJNA446034_S_NODE_10727_length_258_cov_4.814480_g10690_i0 PRJNA446034 10727 258 4.81448 12.4213584 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 470 5.47e-128   NTclustered gi|2031940710|emb|OD957740.1| 5763 g10690 i0 100 1.96899224806202 254 0 98 0 1 254 227 480 Naegleria fowleri Karachi_NF001 strain blastn 508 470 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;