RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA438687" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA438687 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
435284 435284 PRJNA438687_S_NODE_2601_length_276_cov_18.394191_g2511_i0 PRJNA438687 2601 276 18.394191 50.76796716 Rotaria rotatoria 231624 Rotifera other_Eukaryota 464 2.75e-126   NTclustered gi|72153762|gb|DQ089743.1| 231624 g2511 i0 97.778 57.0724637681159 270 5 97 1 8 276 1448 1179 Rotaria rotatoria 28S ribosomal RNA gene, partial sequence blastn 15752 464 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria rotatoria
2985956 2985956 PRJNA438687_S_NODE_2363_length_288_cov_7.845850_g2273_i0 PRJNA438687 2363 288 7.84585 22.596048 Encentrum astridae 360661 Rotifera other_Eukaryota 484 2.2199999999999994e-132   NTclustered gi|124388846|gb|EF151006.1| 360661 g2273 i0 97.203 99.9722222222222 286 8 99 0 3 288 2028 1743 Encentrum astridae 28S ribosomal RNA gene, partial sequence blastn 28792 484 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Dicranophoridae Encentrum Encentrum astridae
5539012 5539012 PRJNA438687_S_NODE_4285_length_214_cov_14.379888_g4195_i0 PRJNA438687 4285 214 14.379888 30.77296032 Brachionus urceolaris 204736 Rotifera other_Eukaryota 355 1.28e-93   NTclustered gi|72153738|gb|DQ089740.1| 204736 g4195 i0 96.714 97.6168224299065 213 7 99 0 2 214 2524 2312 Brachionus urceolaris 28S ribosomal RNA gene, partial sequence blastn 20890 355 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus urceolaris
9363369 9363369 PRJNA438687_S_NODE_6268_length_175_cov_3.478571_g6178_i0 PRJNA438687 6268 175 3.478571 6.08749925 Bryceella stylata 2739610 Rotifera other_Eukaryota 254 3.77e-63   NTclustered gi|1845957807|gb|MT522631.1| 2739610 g6178 i0 99.286 80.0342857142857 140 1 80 0 1 140 953 1092 Bryceella stylata isolate JH_006A06 small subunit ribosomal RNA gene, partial sequence blastn 14006 254 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Proalidae Bryceella Bryceella stylata
15737988 15737988 PRJNA438687_S_NODE_4973_length_199_cov_8.896341_g4883_i0 PRJNA438687 4973 199 8.896341 17.70371859 Brachionus urceolaris 204736 Rotifera other_Eukaryota 276 9.41e-70   NTclustered gi|72153738|gb|DQ089740.1| 204736 g4883 i0 91.626 47.21608040201 203 11 100 4 1 199 2051 1851 Brachionus urceolaris 28S ribosomal RNA gene, partial sequence blastn 9396 276 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus urceolaris
17012588 17012588 PRJNA438687_S_NODE_2074_length_302_cov_3.925094_g1984_i0 PRJNA438687 2074 302 3.925094 11.85378388 Rotaria rotatoria 231624 Rotifera other_Eukaryota 542 1.37e-149   NTclustered gi|72153762|gb|DQ089743.1| 231624 g1984 i0 99.007 26.2615894039735 302 3 100 0 1 302 1503 1804 Rotaria rotatoria 28S ribosomal RNA gene, partial sequence blastn 7931 542 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria rotatoria

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;