RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA438572" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA438572 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1090915 1090915 PRJNA438572_P_NODE_10121_length_322_cov_2.016064_g10002_i0 PRJNA438572 10121 322 2.016064 6.49172608 Verrucomicrobiota 74201 Bacteria Bacteria 507 5.37e-139   NTclustered gi|2874254065|emb|OY970130.1| 412056 g10002 i0 95.062 35.7763975155279 324 12 100 3 1 322 5153022 5153343 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 11520 512 0.990234375 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
1709769 1709769 PRJNA438572_P_NODE_12642_length_290_cov_1.437788_g12523_i0 PRJNA438572 12642 290 1.437788 4.1695852 Horticoccus luteus 2862869 Bacteria Bacteria 464 2.9099999999999993e-126   NTclustered gi|2077391884|gb|CP080507.1| 2862869 g12523 i0 95.517 221.68275862069 290 13 100 0 1 290 541268 541557 Horticoccus luteus strain KSB-15 chromosome, complete genome blastn 64288 464 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Horticoccus Horticoccus luteus
8088129 8088129 PRJNA438572_P_NODE_14667_length_272_cov_1.070352_g14548_i0 PRJNA438572 14667 272 1.070352 2.91135744 Luteolibacter ambystomatis 2824561 Bacteria Bacteria 60.2 1.49e-4   NTclustered gi|2029343589|gb|CP073100.1| 2824561 g14548 i0 100 0.117647058823529 32 0 12 0 138 169 3648388 3648419 Luteolibacter ambystomatis strain 32A chromosome, complete genome blastn 32 60.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter ambystomatis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;