RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA438572" and tax_phylum = "Spirochaetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA438572 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13844610 13844610 PRJNA438572_P_NODE_3851_length_502_cov_2.361305_g3733_i0 PRJNA438572 3851 502 2.361305 11.8537511 Spirochaeta 146 Bacteria Bacteria 580 5.0599999999999986e-161   NTclustered gi|507148391|ref|NR_103194.1| 46355 g3733 i0 87.5 204.609561752988 504 61 100 2 1 502 1219 716 Spirochaeta africana strain Z-7692 23S ribosomal RNA gene, complete sequence blastn 102714 580 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Spirochaeta Spirochaeta africana
18286827 18286827 PRJNA438572_P_NODE_7195_length_376_cov_2.290429_g7076_i0 PRJNA438572 7195 376 2.290429 8.61201304 Salinispira pacifica 1307761 Bacteria Bacteria 333 1.14e-86   NTclustered gi|565679415|gb|CP006939.1| 1307761 g7076 i0 84.393 101.281914893617 346 47 92 3 1 346 385292 385630 Salinispira pacifica strain L21-RPul-D2, complete genome blastn 38082 333 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Salinispira Salinispira pacifica
22111661 22111661 PRJNA438572_P_NODE_21058_length_247_cov_0.896552_g20939_i0 PRJNA438572 21058 247 0.896552 2.21448344 Treponema vincentii 69710 Bacteria Bacteria 257 4.41e-64   NTclustered gi|2034589463|gb|CP050497.1| 69710 g20939 i0 85.425 7 247 36 100 0 1 247 2581868 2582114 Treponema vincentii strain OMZ 806 chromosome, complete genome blastn 1729 257 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;