RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA438572" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA438572 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18286560 18286560 PRJNA438572_P_NODE_14035_length_278_cov_1.136585_g13916_i0 PRJNA438572 14035 278 1.136585 3.1597063 Strongyloides ratti 34506 Nematoda Nematoda 231 3.06e-56   NTclustered gi|1376147935|ref|XM_024654645.1| 34506 g13916 i0 81.72 18.2805755395683 279 49 100 2 1 278 505 782 Strongyloides ratti GMP reductase (SRAE_2000345100), partial mRNA blastn 5082 231 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
23387075 23387075 PRJNA438572_P_NODE_11179_length_307_cov_2.333333_g11060_i0 PRJNA438572 11179 307 2.333333 7.16333231 Pristionchus exspectatus 1195656 Nematoda Nematoda 159 1.6399999999999999e-34   NTclustered gi|390135444|gb|JQ399919.1| 1195656 g11060 i0 78.077 8.04885993485342 260 51 84 6 50 306 13 269 Pristionchus exspectatus large subunit ribosomal protein 30 (rpl-30) gene, partial cds blastn 2471 159 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus exspectatus
23387119 23387119 PRJNA438572_P_NODE_14019_length_278_cov_1.141463_g13900_i0 PRJNA438572 14019 278 1.141463 3.17326714 Strongyloides ratti 34506 Nematoda Nematoda 182 3.13e-41   NTclustered gi|1376135993|ref|XM_024648054.1| 34506 g13900 i0 84.127 8.03597122302158 189 28 68 2 21 208 1235 1048 Strongyloides ratti Carboxyl transferase domain and Acetyl-coenzyme A carboxyltransferase, N-terminal domain and Acetyl-coenzyme A carboxyltransferase, C-terminal domain-containing protein (SRAE_1000113500), partial mRNA blastn 2234 182 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
24661101 24661101 PRJNA438572_P_NODE_10380_length_318_cov_1.273469_g10261_i0 PRJNA438572 10380 318 1.273469 4.04963142 Trichinella spiralis 6334 Nematoda Nematoda 75 6.36e-9   NTclustered gi|339241348|ref|XM_003376552.1| 6334 g10261 i0 82.022 0.279874213836478 89 14 28 2 15 102 237 324 Trichinella spiralis T-complex protein 1 subunit beta (Tsp_00786) mRNA, complete cds blastn 89 75 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;