RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA438572" and tax_phylum = "Echinodermata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA438572 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23387302 23387302 PRJNA438572_P_NODE_3499_length_527_cov_1.814978_g3381_i0 PRJNA438572 3499 527 1.814978 9.56493406 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 477 7.199999999999998e-130   NTclustered gi|1752411115|ref|XM_030977236.1| 7668 g3381 i0 83.832 332.628083491461 501 81 95 0 1 501 1447 1947 PREDICTED: Strongylocentrotus purpuratus polyubiquitin-C (LOC754856), mRNA blastn 175295 477 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
24661336 24661336 PRJNA438572_P_NODE_24640_length_242_cov_0.875740_g24521_i0 PRJNA438572 24640 242 0.87574 2.1192908 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 130 9.79e-26   NTclustered gi|2037969611|ref|XM_041596785.1| 7654 g24521 i0 76.987 37.2066115702479 239 47 97 8 1 235 560 326 PREDICTED: Lytechinus variegatus 60S ribosomal protein L10a-like (LOC121405821), mRNA blastn 9004 130 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;