RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA438572" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA438572 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6812815 6812815 PRJNA438572_P_NODE_22426_length_245_cov_0.906977_g22307_i0 PRJNA438572 22426 245 0.906977 2.22209365 Fimicolochytrium jonesii 1396493 Fungi Fungi 95.3 3.62e-15   NTclustered gi|2432081011|ref|XM_053070530.1| 1396493 g22307 i0 82.857 0.428571428571429 105 18 43 0 33 137 330 226 Fimicolochytrium jonesii 50S ribosomal protein L30e-like protein (EV422DRAFT_532370), mRNA blastn 105 95.3 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
10639064 10639064 PRJNA438572_P_NODE_6549_length_392_cov_0.978056_g6430_i0 PRJNA438572 6549 392 0.978056 3.83397952 Synchytrium microbalum 1806994 Fungi Fungi 292 2.03e-74   NTclustered gi|1759161090|ref|XM_031170872.1| 1806994 g6430 i0 81.818 86.4081632653061 352 60 89 4 1 350 889 1238 Synchytrium microbalum succinate dehydrogenase (SmJEL517_g04944), partial mRNA blastn 33872 292 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
13188736 13188736 PRJNA438572_P_NODE_22911_length_244_cov_0.912281_g22792_i0 PRJNA438572 22911 244 0.912281 2.22596564 Fimicolochytrium jonesii 1396493 Fungi Fungi 243 1.22e-59   NTclustered gi|2432070883|ref|XM_053071901.1| 1396493 g22792 i0 84.711 91.4426229508197 242 37 99 0 1 242 1110 869 Fimicolochytrium jonesii beta-tubulin (EV422DRAFT_556178), mRNA blastn 22312 243 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;