RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA438572" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA438572 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
434869 434869 PRJNA438572_P_NODE_13441_length_283_cov_1.323810_g13322_i0 PRJNA438572 13441 283 1.32381 3.7463823 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 152 2.4999999999999997e-32   NTclustered gi|2874253812|emb|OY969796.1| 1672391 g13322 i0 76.491 1.46643109540636 285 63 100 4 1 283 441211 440929 MAG: uncultured Chloroflexia bacterium isolate MFD01872.bin.1.103 genome assembly, chromosome: 1 blastn 415 152 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
1709795 1709795 PRJNA438572_P_NODE_14862_length_270_cov_1.187817_g14743_i0 PRJNA438572 14862 270 1.187817 3.2071059 Roseiflexus sp. RS-1 357808 Bacteria Bacteria 167 8.47e-37   NTclustered gi|470481958|ref|NR_076505.1| 357808 g14743 i0 79.231 9.2962962962963 260 38 94 13 16 270 1428 1180 Roseiflexus sp. RS-1 strain RS-1 23S ribosomal RNA, complete sequence blastn 2510 167 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Roseiflexaceae Roseiflexus Roseiflexus sp. RS-1
24042903 24042903 PRJNA438572_P_NODE_3399_length_534_cov_2.696312_g3281_i0 PRJNA438572 3399 534 2.696312 14.39830608 Herpetosiphon 64 Bacteria Bacteria 412 2.0899999999999993e-110   NTclustered gi|470482680|ref|NR_076546.1| 65 g3281 i0 81.765 251.790262172285 510 77 94 15 1 504 937 438 Herpetosiphon aurantiacus strain DSM 785 23S ribosomal RNA gene, complete sequence blastn 134456 412 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus
24661456 24661456 PRJNA438572_P_NODE_7840_length_363_cov_1.058621_g7721_i0 PRJNA438572 7840 363 1.058621 3.84279423 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 60.2 2.06e-4   NTclustered gi|2814788336|emb|OY760867.2| 2026734 g7721 i0 97.143 0.575757575757576 35 1 10 0 125 159 3495592 3495558 MAG: Dehalococcoidia bacterium isolate ec36dd00-29ce-491f-9a3f-6816ace52b4b genome assembly, chromosome: 1 blastn 209 60.2 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;