RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA438572" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA438572 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10638850 10638850 PRJNA438572_P_NODE_15349_length_265_cov_2.833333_g15230_i0 PRJNA438572 15349 265 2.833333 7.50833245 Eimeria mitis 44415 SAR_Eukaryotes SAR_Eukaryotes 121 6.55e-23   NTclustered gi|916507643|ref|XM_013498674.1| 44415 g15230 i0 82.836 0.822641509433962 134 23 51 0 26 159 197 330 Eimeria mitis uncharacterized protein (EMH_0067880), partial mRNA blastn 218 121 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis
17012509 17012509 PRJNA438572_P_NODE_6734_length_387_cov_1.187898_g6615_i0 PRJNA438572 6734 387 1.187898 4.59716526 Plasmodium gonderi 77519 SAR_Eukaryotes SAR_Eukaryotes 67.6 1.32e-6   NTclustered gi|1620953318|ref|XM_028688720.1| 77519 g6615 i0 88.889 0.13953488372093 54 6 14 0 131 184 697 750 Plasmodium gonderi ornithine aminotransferase (PGO_113860), partial mRNA blastn 54 67.6 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gonderi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;