RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA438572" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA438572 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
434970 434970 PRJNA438572_P_NODE_18961_length_250_cov_0.881356_g18842_i0 PRJNA438572 18961 250 0.881356 2.20339 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 52.8 0.023   NTclustered gi|2893358450|emb|OZ220742.1| 2651171 g18842 i0 100 0.112 28 0 11 0 199 226 2471547 2471574 MAG: Thermoanaerobaculia bacterium isolate 0db66e92-d31a-4200-8262-fff8455c21c0 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
5538739 5538739 PRJNA438572_P_NODE_21385_length_246_cov_0.901734_g21266_i0 PRJNA438572 21385 246 0.901734 2.21826564 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 449 6.74e-122   NTclustered gi|307713386|gb|HM438236.1| 194844 g21266 i0 99.595 99.8577235772358 247 0 100 1 1 246 288 42 Uncultured Acidobacteriaceae bacterium clone 3G10 16S ribosomal RNA gene, partial sequence blastn 24565 449 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
6812642 6812642 PRJNA438572_P_NODE_12126_length_295_cov_1.405405_g12007_i0 PRJNA438572 12126 295 1.405405 4.14594475 Acidobacteriota bacterium 1978231 Bacteria Bacteria 405 1.82e-108   NTclustered gi|1958098837|gb|CP065005.1| 1978231 g12007 i0 91.497 126.064406779661 294 25 99 0 2 295 4649146 4649439 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.198_cln chromosome, complete genome blastn 37189 405 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
9362877 9362877 PRJNA438572_P_NODE_1148_length_871_cov_1.385965_g1057_i0 PRJNA438572 1148 871 1.385965 12.07175515 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 457 1.5900000000000002e-123   NTclustered gi|2874253836|emb|OY969886.1| 171953 g1057 i0 77.11 422.787600459242 865 150 96 37 15 853 887672 888514 MAG: uncultured Acidobacteriota bacterium isolate MFD10007.bin.c.1 genome assembly, chromosome: 1 blastn 368248 457 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
15737586 15737586 PRJNA438572_P_NODE_15353_length_265_cov_2.302083_g15234_i0 PRJNA438572 15353 265 2.302083 6.10051995 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 228 3.7499999999999994e-55   NTclustered gi|2874253769|emb|OY969716.1| 171953 g15234 i0 85.714 189.354716981132 217 29 82 2 1 216 4154104 4154319 MAG: uncultured Acidobacteriota bacterium isolate MFD04540.bin.c.1 genome assembly, chromosome: 1 blastn 50179 228 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
18286554 18286554 PRJNA438572_P_NODE_13795_length_280_cov_1.130435_g13676_i0 PRJNA438572 13795 280 1.130435 3.165218 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 507 4.58e-139   NTclustered gi|339646627|gb|JN039016.1| 171953 g13676 i0 99.286 96.9857142857143 280 2 100 0 1 280 4 283 Uncultured Acidobacteria bacterium clone P-B296 16S ribosomal RNA gene, partial sequence blastn 27156 507 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;