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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA438572" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 12 ✖

bioproject 1

  • PRJNA438572 · 12 ✖

analysis 1

  • blastn · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1091108 1091108 PRJNA438572_P_NODE_8521_length_349_cov_1.307971_g8402_i0 PRJNA438572 8521 349 1.307971 4.56481879 Desmochloris 138596 Plants Plants 628 1.1999999999999999e-175   NTclustered gi|313476263|emb|FM882216.1| 138176 g8402 i0 99.14 100.002865329513 349 3 100 0 1 349 954 606 Desmochloris halophila partial 18S rRNA gene, ITS1, 5.8S rRNA and ITS2, strain CCAP 6006/1 blastn 34901 634 0.990536277602524 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
2985540 2985540 PRJNA438572_P_NODE_11623_length_302_cov_0.847162_g11504_i0 PRJNA438572 11623 302 0.847162 2.55842924 Auxenochlorella protothecoides 3075 Plants Plants 254 7.18e-63   NTclustered gi|760446452|ref|XM_011401993.1| 3075 g11504 i0 84.436 82.3741721854305 257 40 85 0 46 302 533 277 Auxenochlorella protothecoides Isocitrate dehydrogenase [NADP], chloroplastic partial mRNA blastn 24877 254 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
2985718 2985718 PRJNA438572_P_NODE_22623_length_244_cov_1.649123_g22504_i0 PRJNA438572 22623 244 1.649123 4.02386012 Coccomyxa subellipsoidea 248742 Plants Plants 259 1.21e-64   NTclustered gi|1360638125|gb|AC277041.1| 574566 g22504 i0 86.864 64.8155737704918 236 25 95 4 13 244 39814 39581 Coccomyxa subellipsoidea C-169 clone FAHX05-A01, complete sequence blastn 15815 259 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
8088293 8088293 PRJNA438572_P_NODE_2927_length_573_cov_1.780000_g2810_i0 PRJNA438572 2927 573 1.78 10.1994 Chloroidium ellipsoideum 63676 Plants Plants 593 7.489999999999998e-165   NTclustered gi|1169296931|gb|KY364701.1| 63676 g2810 i0 86.067 91.8219895287958 567 62 98 10 9 572 3993 4545 Chloroidium ellipsoideum 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 52614 593 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
10639078 10639078 PRJNA438572_P_NODE_7149_length_377_cov_2.335526_g7030_i0 PRJNA438572 7149 377 2.335526 8.80493302 uncultured Scenedesmus 223195 Plants Plants 693 0   NTclustered gi|430000717|gb|JX877643.1| 223195 g7030 i0 100 95.5915119363395 375 0 99 0 3 377 380 6 Uncultured Scenedesmus clone HP04 23S ribosomal RNA gene, partial sequence blastn 36038 693 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae   uncultured Scenedesmus
11294258 11294258 PRJNA438572_P_NODE_9749_length_328_cov_1.015686_g9630_i0 PRJNA438572 9749 328 1.015686 3.33145008 Apatococcus 904362 Plants Plants 601 2.4399999999999998e-167   NTclustered gi|1561005742|gb|MG493358.1| 167235 g9630 i0 99.695 100.198170731707 328 1 100 0 1 328 619 946 Uncultured Trebouxiophyceae clone LSY2041 18S ribosomal RNA gene, partial sequence blastn 32865 606 0.991749174917492 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Trebouxiophyceae
17012543 17012543 PRJNA438572_P_NODE_8594_length_347_cov_2.470803_g8475_i0 PRJNA438572 8594 347 2.470803 8.57368641 Monoraphidium neglectum 145388 Plants Plants 132 4.1e-26   NTclustered gi|926770371|ref|XM_014038206.1| 145388 g8475 i0 77.056 19.6512968299712 231 51 66 2 118 347 46 275 Monoraphidium neglectum solute carrier family 25 partial mRNA blastn 6819 132 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
19560897 19560897 PRJNA438572_P_NODE_16916_length_253_cov_0.866667_g16797_i0 PRJNA438572 16916 253 0.866667 2.19266751 Monoraphidium neglectum 145388 Plants Plants 202 2.15e-47   NTclustered gi|926773481|ref|XM_014039761.1| 145388 g16797 i0 82.533 7.39130434782609 229 40 91 0 25 253 1047 819 Monoraphidium neglectum glycine hydroxymethyltransferase partial mRNA blastn 1870 202 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
19560960 19560960 PRJNA438572_P_NODE_21476_length_246_cov_0.901734_g21357_i0 PRJNA438572 21476 246 0.901734 2.21826564 Desmochloris halophila 138176 Plants Plants 388 1.49e-103   NTclustered gi|371782086|emb|HE610118.1| 138176 g21357 i0 95.142 72.7560975609756 247 11 100 1 1 246 3708 3954 Desmochloris halophila 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2073 blastn 17898 388 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
19561087 19561087 PRJNA438572_P_NODE_6316_length_399_cov_1.674847_g6197_i0 PRJNA438572 6316 399 1.674847 6.68263953 Koliella corcontica 155904 Plants Plants 562 1.43e-155   NTclustered gi|723456950|ref|NC_025536.1| 155904 g6197 i0 92.802 126 389 26 99 2 3 390 82764 83151 Koliella corcontica culture-collection SAG:24.84 chloroplast, complete genome blastn 50274 562 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella corcontica
22111662 22111662 PRJNA438572_P_NODE_21138_length_247_cov_0.896552_g21019_i0 PRJNA438572 21138 247 0.896552 2.21448344 Ulva intestinalis 3116 Plants Plants 265 2.63e-66   NTclustered gi|2127885487|ref|NC_058886.1| 3116 g21019 i0 86.992 42.6315789473684 246 19 97 9 9 247 30317 30556 Ulva intestinalis isolate CNS000531 mitochondrion, complete genome blastn 10530 265 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva intestinalis
22111673 22111673 PRJNA438572_P_NODE_21898_length_245_cov_1.918605_g21779_i0 PRJNA438572 21898 245 1.918605 4.70058225 Coccomyxa subellipsoidea 248742 Plants Plants 307 4.2700000000000006e-79   NTclustered gi|1360638125|gb|AC277041.1| 574566 g21779 i0 91.518 16.2775510204082 224 17 91 2 1 223 39547 39769 Coccomyxa subellipsoidea C-169 clone FAHX05-A01, complete sequence blastn 3988 307 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;