RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA438111" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA438111 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9362011 9362011 PRJNA438111_P_NODE_29868_length_210_cov_4.425414_g29243_i0 PRJNA438111 29868 210 4.425414 9.2933694 Nitrospira tepida 2973512 Bacteria Bacteria 202 1.73e-47   NTclustered gi|2526808154|emb|OX365700.1| 2973512 g29243 i0 83.092 8.88571428571429 207 29 99 4 8 210 4340884 4341088 Nitrospira sp. DNF genome assembly, chromosome: NsDNF blastn 1866 202 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira tepida
17012123 17012123 PRJNA438111_P_NODE_90194_length_150_cov_4.619835_g89569_i0 PRJNA438111 90194 150 4.619835 6.9297525 Nitrospira sp. 70125 Bacteria Bacteria 117 4.27e-22   NTclustered gi|2511635996|gb|CP126122.1| 70125 g89569 i0 81.081 0.986666666666667 148 26 98 2 4 150 4359354 4359208 MAG: Nitrospira sp. isolate bin_005 chromosome blastn 148 117 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
24660695 24660695 PRJNA438111_P_NODE_60400_length_171_cov_2.471831_g59775_i0 PRJNA438111 60400 171 2.471831 4.22683101 Nitrospira sp. 70125 Bacteria Bacteria 215 1.73e-51   NTclustered gi|2290907019|gb|CP060499.1| 70125 g59775 i0 89.82 16.2280701754386 167 17 98 0 5 171 2718951 2719117 MAG: Nitrospira sp. isolate DH1 chromosome, complete genome blastn 2775 215 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;