RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA438111" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA438111 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8087461 8087461 PRJNA438111_P_NODE_45347_length_187_cov_2.677215_g44722_i0 PRJNA438111 45347 187 2.677215 5.00639205 Caenorhabditis briggsae 6238 Nematoda Nematoda 119 1.56e-22   NTclustered gi|2158430750|ref|XM_045244082.1| 6238 g44722 i0 81.69 3.74331550802139 142 26 76 0 1 142 4573 4714 Caenorhabditis briggsae Protein CBR-PRP-8 (Cbr-prp-8), partial mRNA blastn 700 119 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
11912657 11912657 PRJNA438111_P_NODE_22150_length_229_cov_3.550000_g21525_i0 PRJNA438111 22150 229 3.55 8.1295 Strongyloides stercoralis 6248 Nematoda Nematoda 91.6 4.33e-14   NTclustered gi|1851063735|dbj|LC533901.1| 6248 g21525 i0 75.122 87.7554585152838 205 45 88 6 26 227 10842 11043 Strongyloides stercoralis MYZ001_8 mitochondrial DNA, complete genome blastn 20096 91.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides stercoralis
22110628 22110628 PRJNA438111_P_NODE_3118_length_550_cov_126.654511_g2629_i0 PRJNA438111 3118 550 126.654511 696.5998105 Strongyloides ratti 34506 Nematoda Nematoda 322 3.74e-83   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g2629 i0 83.429 97.1 350 54 63 4 1 348 337 684 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 53405 322 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;