RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA438111" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA438111 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15736703 15736703 PRJNA438111_P_NODE_3533_length_521_cov_6.589431_g3023_i0 PRJNA438111 3533 521 6.589431 34.33093551 Dictyostelium discoideum 44689 Evosea other_Eukaryota 279 2.15e-70   NTclustered gi|66818077|ref|XM_637640.1| 352472 g3023 i0 81.285 18.2053742802303 358 55 68 10 28 379 600 249 Dictyostelium discoideum AX4 NADH-ubiquinone oxidoreductase 23 kDa subunit (ndufs8) mRNA, complete cds blastn 9485 279 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
22110419 22110419 PRJNA438111_P_NODE_13798_length_280_cov_6.250996_g13173_i0 PRJNA438111 13798 280 6.250996 17.5027888 Entamoeba histolytica 5759 Evosea other_Eukaryota 228 3.9899999999999986e-55   NTclustered gi|511085018|dbj|AK419745.1| 5759 g13173 i0 81.429 2 280 50 99 2 1 279 450 728 Entamoeba histolytica cDNA clone: Xeh-005L18, 26S protease regulatory subunit, putative, complete cds, strain: HM-1:IMSS blastn 560 228 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
24661028 24661028 PRJNA438111_P_NODE_85660_length_153_cov_5.717742_g85035_i0 PRJNA438111 85660 153 5.717742 8.74814526 Dictyostelium purpureum 5786 Evosea other_Eukaryota 95.3 2.05e-15   NTclustered gi|330840413|ref|XM_003292163.1| 5786 g85035 i0 88.462 0.509803921568627 78 9 51 0 53 130 701 624 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_57790), partial mRNA blastn 78 95.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;