RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA438111" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA438111 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4261689 4261689 PRJNA438111_P_NODE_77884_length_159_cov_4.215385_g77259_i0 PRJNA438111 77884 159 4.215385 6.70246215 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 294 1.98e-75   NTclustered gi|336478352|emb|FR872580.1| 765952 g77259 i0 100 1 159 0 100 0 1 159 1709080 1709238 Parachlamydia acanthamoebae UV-7, complete genome blastn 159 294 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
10638175 10638175 PRJNA438111_P_NODE_49329_length_182_cov_3.660131_g48704_i0 PRJNA438111 49329 182 3.660131 6.66143842 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 331 1.7800000000000002e-86   NTclustered gi|336478352|emb|FR872580.1| 765952 g48704 i0 99.451 1 182 1 100 0 1 182 542290 542471 Parachlamydia acanthamoebae UV-7, complete genome blastn 182 331 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
11293668 11293668 PRJNA438111_P_NODE_28949_length_210_cov_5.082873_g28324_i0 PRJNA438111 28949 210 5.082873 10.6740333 Pseudomonadati 3379134 Bacteria Bacteria 54.7 0.005   NTclustered gi|2874253676|emb|OY969110.1| 305355 g28324 i0 100 1.4952380952381 29 0 14 0 182 210 1208521 1208493 MAG: uncultured Chlamydiae bacterium isolate MFD00082.bin.c.5 genome assembly, chromosome: 1 blastn 314 54.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       uncultured Chlamydiae bacterium
15736779 15736779 PRJNA438111_P_NODE_41393_length_192_cov_3.214724_g40768_i0 PRJNA438111 41393 192 3.214724 6.17227008 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 355 1.13e-93   NTclustered gi|336478352|emb|FR872580.1| 765952 g40768 i0 100 1 192 0 100 0 1 192 2654494 2654303 Parachlamydia acanthamoebae UV-7, complete genome blastn 192 355 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
23386637 23386637 PRJNA438111_P_NODE_61619_length_170_cov_2.858156_g60994_i0 PRJNA438111 61619 170 2.858156 4.8588652 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 292 7.69e-75   NTclustered gi|336478352|emb|FR872580.1| 765952 g60994 i0 97.647 5.82352941176471 170 4 100 0 1 170 2278497 2278666 Parachlamydia acanthamoebae UV-7, complete genome blastn 990 292 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;