RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA438111" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA438111 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10638594 10638594 PRJNA438111_P_NODE_79649_length_158_cov_3.000000_g79024_i0 PRJNA438111 79649 158 3 4.74 Peredibacter starrii 28202 Bacteria Bacteria 82.4 1.67e-11   NTclustered gi|2631252187|gb|CP139487.1| 28202 g79024 i0 80.374 1.23417721518987 107 21 68 0 42 148 3652738 3652632 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 195 82.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
18286350 18286350 PRJNA438111_P_NODE_82075_length_156_cov_3.354331_g81450_i0 PRJNA438111 82075 156 3.354331 5.23275636 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 211 2e-50   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g81450 i0 91.026 2 156 14 100 0 1 156 120151 120306 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 312 211 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198
24661032 24661032 PRJNA438111_P_NODE_85840_length_153_cov_4.443548_g85215_i0 PRJNA438111 85840 153 4.443548 6.79862844 Peredibacter starrii 28202 Bacteria Bacteria 97.1 5.71e-16   NTclustered gi|2631252187|gb|CP139487.1| 28202 g85215 i0 85.417 0.627450980392157 96 11 63 1 21 116 4041252 4041160 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 96 97.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;