RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA438111" and tax_kingdom = "Fusobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA438111 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2984779 2984779 PRJNA438111_P_NODE_38563_length_196_cov_4.425150_g37938_i0 PRJNA438111 38563 196 4.42515 8.673294 uncultured Ilyobacter sp. 544433 Bacteria Bacteria 60.2 1.01e-4   NTclustered gi|2814788377|emb|OY764057.2| 544433 g37938 i0 97.143 0.178571428571429 35 1 18 0 138 172 735741 735775 MAG: uncultured Ilyobacter sp. isolate b6197fd5-c757-4c76-928f-f28f0df2880b genome assembly, chromosome: 1 blastn 35 60.2 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Ilyobacter uncultured Ilyobacter sp.
20836198 20836198 PRJNA438111_P_NODE_72577_length_163_cov_1.059701_g71952_i0 PRJNA438111 72577 163 1.059701 1.72731263 Fusobacterium animalis 76859 Bacteria Bacteria 302 1.22e-77   NTclustered gi|2706444732|gb|CP084069.1| 76859 g71952 i0 100 100 163 0 100 0 1 163 883614 883776 Fusobacterium animalis strain SB062 chromosome, complete genome blastn 16300 302 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium animalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;