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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA438111" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 12 ✖

bioproject 1

  • PRJNA438111 · 12 ✖

analysis 1

  • blastn · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1709061 1709061 PRJNA438111_P_NODE_41882_length_191_cov_4.740741_g41257_i0 PRJNA438111 41882 191 4.740741 9.05481531 Chlorella variabilis 554065 Plants Plants 207 3.31e-49   NTclustered gi|552840730|ref|XM_005850063.1| 554065 g41257 i0 88.068 1.09424083769634 176 20 92 1 14 188 195 370 Chlorella variabilis 40S ribosomal protein S18 (CHLNCDRAFT_34417) mRNA, complete cds blastn 209 207 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
1709138 1709138 PRJNA438111_P_NODE_47482_length_184_cov_5.148387_g46857_i0 PRJNA438111 47482 184 5.148387 9.47303208 Trebouxia aggregata 160068 Plants Plants 137 4.21e-28   NTclustered gi|162134313|gb|EU123973.1| 160068 g46857 i0 97.5 20.0217391304348 80 2 73 0 31 110 4620 4541 Trebouxia aggregata strain SAG 219-1d septum site-determining protein (minD) gene, complete cds; tRNA-Arg (trnR(acg)) gene, complete sequence; and apocytochrome f of cytochrome b6/f complex (petA) gene, complete cds; chloroplast blastn 3684 137 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
2984969 2984969 PRJNA438111_P_NODE_50943_length_180_cov_5.403974_g50318_i0 PRJNA438111 50943 180 5.403974 9.7271532 Trebouxia sp. SL0000003 3350044 Plants Plants 130 6.86e-26   NTclustered gi|2917929625|emb|OZ234913.1| 3350044 g50318 i0 97.368 0.422222222222222 76 2 42 0 96 171 3111687 3111762 Trebouxia sp. SL0000003 genome assembly, chromosome: 8 blastn 76 130 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
8087948 8087948 PRJNA438111_P_NODE_83727_length_155_cov_2.666667_g83102_i0 PRJNA438111 83727 155 2.666667 4.13333385 Trebouxia aggregata 160068 Plants Plants 287 3.21e-73   NTclustered gi|162134301|gb|EU123970.1| 160068 g83102 i0 100 1 155 0 100 0 1 155 3984 3830 Trebouxia aggregata strain SAG 219-1d ATP-binding subunit of protochlorophyllide (chlL) gene, complete cds; and heme attachment to plastid cytochrome c (ccsA) gene, partial cds; chloroplast blastn 155 287 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
10018855 10018855 PRJNA438111_P_NODE_62988_length_169_cov_2.900000_g62363_i0 PRJNA438111 62988 169 2.9 4.901 Chlorophyta 3041 Plants Plants 165 1.74e-36   NTclustered gi|1241929125|ref|NC_035823.1| 83791 g62363 i0 84.431 73.4852071005917 167 26 99 0 1 167 20161 20327 Ulva flexuosa chloroplast, complete genome blastn 12419 165 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva flexuosa
11912890 11912890 PRJNA438111_P_NODE_38470_length_196_cov_4.886228_g37845_i0 PRJNA438111 38470 196 4.886228 9.57700688 Pseudochlorella signiensis 173497 Plants Plants 348 1.93e-91   NTclustered gi|2724824453|gb|PP746560.1| 173497 g37845 i0 98.492 1.01530612244898 199 0 100 1 1 196 13129 12931 Pseudochlorella signiensis culture SAG:7.90 mitochondrion, complete genome blastn 199 348 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
13188490 13188490 PRJNA438111_P_NODE_90171_length_150_cov_4.694215_g89546_i0 PRJNA438111 90171 150 4.694215 7.0413225 Chloroidium sp. UTEX 3077 2686440 Plants Plants 278 1.85e-70   NTclustered gi|1785188440|gb|MN646686.1| 2686440 g89546 i0 100 1 150 0 100 0 1 150 37608 37459 Chloroidium sp. UTEX 3077 mitochondrion, complete genome blastn 150 278 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium sp. UTEX 3077
14463240 14463240 PRJNA438111_P_NODE_67812_length_166_cov_1.839416_g67187_i0 PRJNA438111 67812 166 1.839416 3.05343056 Trebouxia aggregata 160068 Plants Plants 126 8.08e-25   NTclustered gi|162134325|gb|EU123976.1| 160068 g67187 i0 96.154 3.53012048192771 78 2 48 1 4 80 8845 8768 Trebouxia aggregata strain SAG 219-1d probable transport protein (cysT), hypothetical chloroplast RF1 (ycf1), ribosomal protein S12 (rps12), ribosomal protein S7 (rps7), translational elongation factor Tu (tufA), and ribosomal protein L19 (rpl19) genes, complete cds; chloroplast blastn 586 126 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
17668388 17668388 PRJNA438111_P_NODE_61874_length_170_cov_2.014184_g61249_i0 PRJNA438111 61874 170 2.014184 3.4241128 Viridiplantae 33090 Plants Plants 217 4.76e-52   NTclustered gi|725675941|ref|NC_025528.1| 3083 g61249 i0 92.667 120.905882352941 150 11 88 0 19 168 121603 121752 'Chlorella' mirabilis culture-collection SAG:38.88 chloroplast, complete genome blastn 20554 217 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Prasiolaceae Edaphochlorella Edaphochlorella mirabilis
18286167 18286167 PRJNA438111_P_NODE_69335_length_165_cov_1.551471_g68710_i0 PRJNA438111 69335 165 1.551471 2.55992715 Parachlorella kessleri 3074 Plants Plants 163 6.11e-36   NTclustered gi|254798615|ref|NC_012978.1| 3074 g68710 i0 84.663 9.52121212121212 163 25 99 0 1 163 47356 47518 Parachlorella kessleri chloroplast, complete genome blastn 1571 163 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Parachlorella Parachlorella kessleri
20835872 20835872 PRJNA438111_P_NODE_46317_length_186_cov_2.331210_g45692_i0 PRJNA438111 46317 186 2.33121 4.3360506 uncultured Symbiochloris 2562465 Plants Plants 219 1.48e-52   NTclustered gi|2509725906|gb|OR042192.1| 2562465 g45692 i0 90 32.9139784946237 170 16 91 1 17 186 1017 1185 Uncultured Symbiochloris clone BW01 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6122 219 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Symbiochloris
24660745 24660745 PRJNA438111_P_NODE_64120_length_168_cov_3.964029_g63495_i0 PRJNA438111 64120 168 3.964029 6.65956872 Bryopsis plumosa 3130 Plants Plants 93.5 8.32e-15   NTclustered gi|806636891|ref|NC_026795.1| 3130 g63495 i0 92.308 4.31547619047619 65 5 39 0 2 66 62277 62341 Bryopsis plumosa chloroplast complete genome, strain West4718 blastn 725 93.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis plumosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;