RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA438111" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA438111 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18286001 18286001 PRJNA438111_P_NODE_56975_length_174_cov_3.586207_g56350_i0 PRJNA438111 56975 174 3.586207 6.24000018 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 137 3.93e-28   NTclustered gi|2119428550|ref|XM_044690922.1| 51637 g56350 i0 81.548 11.9712643678161 168 29 96 2 7 173 1183 1349 Naegleria lovaniensis uncharacterized protein (C9374_001598), partial mRNA blastn 2083 137 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
19559739 19559739 PRJNA438111_P_NODE_16816_length_258_cov_3.388646_g16191_i0 PRJNA438111 16816 258 3.388646 8.74270668 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 86.1 2.32e-12   NTclustered gi|2119441495|ref|XM_044704460.1| 5763 g16191 i0 76.821 2.71317829457364 151 35 59 0 97 247 2137 2287 Naegleria fowleri uncharacterized protein (FDP41_001382), partial mRNA blastn 700 86.1 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
20835451 20835451 PRJNA438111_P_NODE_10117_length_321_cov_7.482877_g9496_i0 PRJNA438111 10117 321 7.482877 24.02003517 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 52.8 0.03   NTclustered gi|290979949|ref|XM_002672650.1| 5762 g9496 i0 100 0.0872274143302181 28 0 9 0 270 297 4656 4629 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_52142), partial mRNA blastn 28 52.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
22111095 22111095 PRJNA438111_P_NODE_6318_length_395_cov_47.969945_g5724_i0 PRJNA438111 6318 395 47.969945 189.48128275 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 147 1.69e-30   NTclustered gi|2119444727|ref|XM_044705325.1| 5763 g5724 i0 79.902 4.70379746835443 204 37 51 4 105 306 94 295 Naegleria fowleri uncharacterized protein (FDP41_002160), partial mRNA blastn 1858 147 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;