RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA437204" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA437204 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1707478 1707478 PRJNA437204_P_NODE_41622_length_320_cov_1.246964_g41323_i0 PRJNA437204 41622 320 1.246964 3.9902848 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 235 2.78e-57   NTclustered gi|2556892445|gb|CP129479.1| 2202153 g41323 i0 80.374 159.85 321 54 99 8 3 320 887359 887045 MAG: Thermodesulfobacteriota bacterium isolate cMAG.17 chromosome, complete genome blastn 51152 235 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
6811198 6811198 PRJNA437204_P_NODE_87206_length_250_cov_0.870056_g86907_i0 PRJNA437204 87206 250 0.870056 2.17514 Pseudodesulfovibrio aespoeensis 182210 Bacteria Bacteria 52.8 0.023   NTclustered gi|316941978|gb|CP002431.1| 643562 g86907 i0 100 0.112 28 0 11 0 68 95 3384275 3384302 Pseudodesulfovibrio aespoeensis Aspo-2 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio aespoeensis
18283273 18283273 PRJNA437204_P_NODE_109375_length_245_cov_0.895349_g109076_i0 PRJNA437204 109375 245 0.895349 2.19360505 Pseudodesulfovibrio aespoeensis 182210 Bacteria Bacteria 54.7 0.006   NTclustered gi|316941978|gb|CP002431.1| 643562 g109076 i0 100 0.346938775510204 29 0 12 0 6 34 357178 357150 Pseudodesulfovibrio aespoeensis Aspo-2 chromosome, complete genome blastn 85 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio aespoeensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;