RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA437204" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA437204 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4259936 4259936 PRJNA437204_P_NODE_5804_length_666_cov_4.080944_g5514_i0 PRJNA437204 5804 666 4.080944 27.17908704 Pristionchus bulgaricus 1486442 Nematoda Nematoda 368 5.799999999999998e-97   NTclustered gi|610559301|gb|KJ395505.1| 1486442 g5514 i0 78.328 76.7012012012012 586 113 87 13 88 666 641 63 Pristionchus bulgaricus isolate sp18 ribosomal protein (rpl-1) gene, partial cds blastn 51083 368 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus bulgaricus
9360135 9360135 PRJNA437204_P_NODE_13468_length_478_cov_6.841975_g13169_i0 PRJNA437204 13468 478 6.841975 32.704640499999996 Koerneria sp. RS1982 358044 Nematoda Nematoda 259 2.5500000000000003e-64   NTclustered gi|150982149|gb|EF634663.1| 358044 g13169 i0 80 17.6987447698745 370 59 76 11 56 419 28 388 Koerneria sp. RS1982 large subunit ribosomal protein 27a (rpl-27a) mRNA, partial cds blastn 8460 259 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Koerneria Koerneria sp. RS1982
11910965 11910965 PRJNA437204_P_NODE_23410_length_388_cov_3.349206_g23111_i0 PRJNA437204 23410 388 3.349206 12.99491928 Strongyloides papillosus 174720 Nematoda Nematoda 202 3.48e-47   NTclustered gi|690018840|emb|LM526136.1| 174720 g23111 i0 79.649 6.8659793814433 285 54 73 4 63 345 7759 8041 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000493 blastn 2664 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
13185783 13185783 PRJNA437204_P_NODE_15771_length_450_cov_2.294430_g15472_i0 PRJNA437204 15771 450 2.29443 10.324935 Pristionchus bucculentus 1317126 Nematoda Nematoda 178 6.89e-40   NTclustered gi|479330844|gb|KC463843.1| 1317126 g15472 i0 80.165 5.43777777777778 242 44 53 4 148 387 252 13 Pristionchus bucculentus strain RS5596 large subunit ribosomal protein 30 (rpl30) gene, partial cds blastn 2447 178 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus bucculentus
17010313 17010313 PRJNA437204_P_NODE_67214_length_269_cov_1.464286_g66915_i0 PRJNA437204 67214 269 1.464286 3.93892934 Pristionchus americanus 376549 Nematoda Nematoda 122 1.8499999999999998e-23   NTclustered gi|150981875|gb|EF634507.1| 376549 g66915 i0 81.013 37.2379182156134 158 26 58 3 1 156 465 620 Pristionchus americanus large subunit ribosomal protein 1 (rpl-1) mRNA, partial cds blastn 10017 122 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus americanus
20215745 20215745 PRJNA437204_P_NODE_19836_length_412_cov_5.716814_g19537_i0 PRJNA437204 19836 412 5.716814 23.55327368 Pristionchus 54125 Nematoda Nematoda 263 1.68e-65   NTclustered gi|150981855|gb|EF634497.1| 358041 g19537 i0 80.278 68.5995145631068 360 61 86 10 6 360 392 38 Pristionchus uniformis large subunit ribosomal protein 1 (rpl-1) mRNA, partial cds blastn 28263 265 0.992452830188679 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus uniformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;