RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA437204" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA437204 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2984094 2984094 PRJNA437204_P_NODE_83883_length_250_cov_1.333333_g83584_i0 PRJNA437204 83883 250 1.333333 3.3333325 Sandaracinus amylolyticus 927083 Bacteria Bacteria 60.2 1.35e-4   NTclustered gi|2183633570|gb|CP070225.1| 927083 g83584 i0 97.222 0.144 36 0 14 1 72 107 9626811 9626845 Sandaracinus strain MSr10575 (SBSa001) chromosome, complete sequence blastn 36 60.2 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus
14462152 14462152 PRJNA437204_P_NODE_83372_length_251_cov_0.865169_g83073_i0 PRJNA437204 83372 251 0.865169 2.17157419 Cystobacter fuscus 43 Bacteria Bacteria 82.4 2.9e-11   NTclustered gi|2579665545|gb|CP043492.1| 43 g83073 i0 77.305 0.561752988047809 141 30 56 2 103 242 8883778 8883639 Cystobacter fuscus strain Cbf 8 chromosome, complete genome blastn 141 82.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;