RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA437204" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA437204 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5536011 5536011 PRJNA437204_P_NODE_27005_length_369_cov_2.824324_g26706_i0 PRJNA437204 27005 369 2.824324 10.42175556 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 126 2.0399999999999994e-24   NTclustered gi|470375091|ref|XM_004333111.1| 1257118 g26706 i0 84.848 2.91056910569106 132 12 36 6 46 176 1871 1747 Acanthamoeba castellanii str. Neff high molecular weight heat shock protein (ACA1_387860), partial mRNA blastn 1074 126 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8085339 8085339 PRJNA437204_P_NODE_15687_length_451_cov_2.296296_g15388_i0 PRJNA437204 15687 451 2.296296 10.35629496 Paramoeba branchiphila 308475 Discosea other_Eukaryota 381 4.909999999999999e-101   NTclustered gi|226347442|gb|FJ807261.1| 308475 g15388 i0 82.103 89.0088691796009 447 78 99 2 5 450 669 224 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 40143 381 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
11911302 11911302 PRJNA437204_P_NODE_41030_length_322_cov_0.919679_g40731_i0 PRJNA437204 41030 322 0.919679 2.96136638 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 283 9.85e-72   NTclustered gi|470484649|ref|XM_004344039.1| 1257118 g40731 i0 83.121 25.3633540372671 314 49 97 4 9 320 6630 6319 Acanthamoeba castellanii str. Neff PremRNA processing splicing factor 8, putative (ACA1_054320), partial mRNA blastn 8167 283 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19558135 19558135 PRJNA437204_P_NODE_24076_length_385_cov_0.987179_g23777_i0 PRJNA437204 24076 385 0.987179 3.80063915 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 209 2.06e-49   NTclustered gi|470416791|ref|XM_004336874.1| 1257118 g23777 i0 81.538 54.7558441558442 260 42 67 6 128 384 49 305 Acanthamoeba castellanii str. Neff ribosomal protein L44, putative (ACA1_325250), partial mRNA blastn 21081 209 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;