RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA437204" and tax_phylum = "Cercozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA437204 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2984325 2984325 PRJNA437204_P_NODE_98223_length_247_cov_0.885057_g97924_i0 PRJNA437204 98223 247 0.885057 2.18609079 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 252 2.05e-62   NTclustered gi|238617605|gb|FJ973380.1| 45107 g97924 i0 85.375 47.1376518218623 253 25 99 7 3 247 1879 1631 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 11643 252 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
9360841 9360841 PRJNA437204_P_NODE_51548_length_297_cov_1.375000_g51249_i0 PRJNA437204 51548 297 1.375 4.08375 Lecythium sp. 3678_261K 238773 SAR_Eukaryotes SAR_Eukaryotes 204 7.199999999999999e-48   NTclustered gi|33089893|gb|AY283756.1| 238773 g51249 i0 93.431 56.006734006734 137 9 46 0 161 297 768 632 Lecythium sp. 3678_261K actin gene, partial cds blastn 16634 204 1 Eukaryota Sar   Cercozoa Thecofilosea Tectofilosida Chlamydophryidae Lecythium Lecythium sp. 3678_261K
24041410 24041410 PRJNA437204_P_NODE_23999_length_385_cov_1.480769_g23700_i0 PRJNA437204 23999 385 1.480769 5.70096065 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 318 3.28e-82   NTclustered gi|160337323|gb|EF455755.1| 188939 g23700 i0 81.701 101.527272727273 388 65 100 6 1 385 656 272 Thaumatomonas seravini actin gene, partial cds blastn 39088 318 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Thaumatomonas Thaumatomonas seravini

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;