RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA437204" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA437204 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4917727 4917727 PRJNA437204_P_NODE_26324_length_373_cov_1.026667_g26025_i0 PRJNA437204 26324 373 1.026667 3.82946791 Cetobacterium 180162 Bacteria Bacteria 545 1.34e-150   NTclustered gi|2201062197|gb|CP092519.1| 188913 g26025 i0 93.029 122.487935656836 373 26 100 0 1 373 1561232 1561604 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 45688 545 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
13843879 13843879 PRJNA437204_P_NODE_97771_length_247_cov_0.885057_g97472_i0 PRJNA437204 97771 247 0.885057 2.18609079 Fusobacterium 848 Bacteria Bacteria 451 1.88e-122   NTclustered gi|2446175567|gb|CP117964.1| 851 g97472 i0 99.595 489 247 1 100 0 1 247 1456548 1456794 Fusobacterium nucleatum strain 2/1/50A chromosome, complete genome blastn 120783 451 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
22766271 22766271 PRJNA437204_P_NODE_115298_length_243_cov_7.958824_g114999_i0 PRJNA437204 115298 243 7.958824 19.33994232 Fusobacterium 848 Bacteria Bacteria 54.7 0.006   NTclustered gi|2705020071|gb|CP084132.1| 851 g114999 i0 100 6.56378600823045 29 0 12 0 183 211 297081 297053 Fusobacterium nucleatum strain KCOM3713 chromosome, complete genome blastn 1595 54.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
23385065 23385065 PRJNA437204_P_NODE_56939_length_286_cov_1.807512_g56640_i0 PRJNA437204 56939 286 1.807512 5.16948432 Leptotrichia wadei 157687 Bacteria Bacteria 518 2.17e-142   NTclustered gi|1791353085|dbj|AP019829.2| 157687 g56640 i0 99.301 149.601398601399 286 2 100 0 1 286 213093 212808 Leptotrichia wadei JCM16777 DNA, complete genome blastn 42786 518 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;