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contig_metadata

18 rows where analysis = "blastn", bioproject = "PRJNA437204" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 18 ✖

bioproject 1

  • PRJNA437204 · 18 ✖

analysis 1

  • blastn · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
432455 432455 PRJNA437204_P_NODE_35161_length_338_cov_1.743396_g34862_i0 PRJNA437204 35161 338 1.743396 5.89267848 Coccomyxa subellipsoidea 248742 Plants Plants 128 5.15e-25   NTclustered gi|545366316|ref|XM_005648006.1| 574566 g34862 i0 87.5 23.2573964497041 112 12 33 2 126 236 1597 1487 Coccomyxa subellipsoidea C-169 putative ABC transporter partial mRNA blastn 7861 128 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
432594 432594 PRJNA437204_P_NODE_42301_length_318_cov_1.624490_g42002_i0 PRJNA437204 42301 318 1.62449 5.1658782 Volvox carteri 3067 Plants Plants 56.5 0.002   NTclustered gi|302830901|ref|XM_002946971.1| 3068 g42002 i0 96.97 0.283018867924528 33 1 10 0 107 139 29 61 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_103245), partial mRNA blastn 90 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
433524 433524 PRJNA437204_P_NODE_90721_length_249_cov_0.875000_g90422_i0 PRJNA437204 90721 249 0.875 2.17875 Chlorella variabilis 554065 Plants Plants 110 1.32e-19   NTclustered gi|552833980|ref|XM_005848567.1| 554065 g90422 i0 78.09 1.61044176706827 178 36 71 3 4 179 357 181 Chlorella variabilis hypothetical protein (CHLNCDRAFT_30648) mRNA, complete cds blastn 401 110 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
4258618 4258618 PRJNA437204_P_NODE_105984_length_246_cov_0.861272_g105685_i0 PRJNA437204 105984 246 0.861272 2.11872912 Chlamydomonas reinhardtii 3055 Plants Plants 148 2.75e-31   NTclustered gi|2082259086|ref|XM_001697336.2| 3055 g105685 i0 82.927 17.7723577235772 164 28 67 0 83 246 528 365 Chlamydomonas reinhardtii ribosomal protein S14 (CHLRE_11g480150v5), mRNA blastn 4372 148 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
4917452 4917452 PRJNA437204_P_NODE_11364_length_511_cov_1.216895_g11066_i0 PRJNA437204 11364 511 1.216895 6.21833345 root 1 Root_unresolved Root_unresolved 63.9 2.31e-5   NTclustered gi|741870561|ref|NC_026009.1| 3075 g11066 i0 97.297 30.6379647749511 37 1 7 0 320 356 32599 32563 Auxenochlorella protothecoides mitochondrion, complete genome blastn 15656 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
6809562 6809562 PRJNA437204_P_NODE_120446_length_242_cov_1.047337_g120147_i0 PRJNA437204 120446 242 1.047337 2.53455554 Chlorella variabilis 554065 Plants Plants 56.5 0.002   NTclustered gi|552843247|ref|XM_005850723.1| 554065 g120147 i0 96.97 0.136363636363636 33 1 14 0 194 226 2862 2830 Chlorella variabilis hypothetical protein (CHLNCDRAFT_140286) mRNA, complete cds blastn 33 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
10636950 10636950 PRJNA437204_P_NODE_64809_length_273_cov_1.190000_g64510_i0 PRJNA437204 64809 273 1.19 3.2487 Chlamydomonas reinhardtii 3055 Plants Plants 298 2.92e-76   NTclustered gi|2082250514|ref|XM_001690394.2| 3055 g64510 i0 87.645 15.5091575091575 259 28 94 4 9 265 1372 1116 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_07g329700v5), mRNA blastn 4234 298 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
11910794 11910794 PRJNA437204_P_NODE_14630_length_464_cov_1.240409_g14331_i0 PRJNA437204 14630 464 1.240409 5.75549776 Chlorella variabilis 554065 Plants Plants 296 1.89e-75   NTclustered gi|552834565|ref|XM_005848699.1| 554065 g14331 i0 79.391 25.2564655172414 427 82 91 6 41 464 522 99 Chlorella variabilis hypothetical protein (CHLNCDRAFT_59648) mRNA, complete cds blastn 11719 296 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
14460789 14460789 PRJNA437204_P_NODE_128452_length_241_cov_0.916667_g128153_i0 PRJNA437204 128452 241 0.916667 2.20916747 Chlamydomonas reinhardtii 3055 Plants Plants 52.8 0.022   NTclustered gi|2082235797|ref|XM_043058228.1| 3055 g128153 i0 100 0.116182572614108 28 0 12 0 185 212 369 342 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g007550v5), mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
14461844 14461844 PRJNA437204_P_NODE_6772_length_627_cov_2.377256_g6478_i0 PRJNA437204 6772 627 2.377256 14.90539512 Dunaliella salina 3046 Plants Plants 272 4.39e-68   NTclustered gi|333691276|gb|JF346104.1| 3046 g6478 i0 82.188 19.7846889952153 320 53 51 4 27 344 527 844 Dunaliella salina receptor of activated protein kinase C 1 mRNA, complete cds blastn 12405 272 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
14462031 14462031 PRJNA437204_P_NODE_76912_length_254_cov_8.027624_g76613_i0 PRJNA437204 76912 254 8.027624 20.39016496 Monoraphidium neglectum 145388 Plants Plants 104 6.28e-18   NTclustered gi|926777351|ref|XM_014041696.1| 145388 g76613 i0 77.128 0.740157480314961 188 37 73 5 63 247 185 1 Monoraphidium neglectum 60S ribosomal protein L38 mRNA blastn 188 104 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
15734895 15734895 PRJNA437204_P_NODE_24493_length_382_cov_2.355987_g24194_i0 PRJNA437204 24493 382 2.355987 8.99987034 Polytomella parva 51329 Plants Plants 449 1.11e-121   NTclustered gi|1861356407|gb|MT377431.1| 51329 g24194 i0 87.728 97.8324607329843 383 45 100 2 1 382 410 29 Polytomella parva clone 0016300141 tubulin alpha chain (TBA) mRNA, complete cds; plastid blastn 37372 449 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella parva
18284186 18284186 PRJNA437204_P_NODE_40855_length_322_cov_1.236948_g40556_i0 PRJNA437204 40855 322 1.236948 3.98297256 Monoraphidium neglectum 145388 Plants Plants 67.6 1.08e-6   NTclustered gi|926791998|ref|XM_014049019.1| 145388 g40556 i0 91.667 4.81987577639752 48 4 15 0 9 56 1471 1424 Monoraphidium neglectum hypothetical protein mRNA blastn 1552 67.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
18941248 18941248 PRJNA437204_P_NODE_43535_length_315_cov_1.867769_g43236_i0 PRJNA437204 43535 315 1.867769 5.88347235 Eukaryota 2759 Plants Plants 60.2 1.76e-4   NTclustered gi|2082236599|ref|XM_043058554.1| 3055 g43236 i0 97.143 12.7714285714286 35 1 11 0 157 191 361 327 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g025950v5), mRNA blastn 4023 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
19559311 19559311 PRJNA437204_P_NODE_83496_length_250_cov_2.581921_g83197_i0 PRJNA437204 83496 250 2.581921 6.4548025000000004 Chlorella variabilis 554065 Plants Plants 211 3.53e-50   NTclustered gi|552811974|ref|XM_005843541.1| 554065 g83197 i0 83.478 9.988 230 34 91 4 9 236 797 1024 Chlorella variabilis casein protein kinase 2 alpha subunit (CHLNCDRAFT_37369) mRNA, complete cds blastn 2497 211 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
20833836 20833836 PRJNA437204_P_NODE_19597_length_414_cov_7.686217_g19298_i0 PRJNA437204 19597 414 7.686217 31.82093838 Monoraphidium neglectum 145388 Plants Plants 241 7.91e-59   NTclustered gi|926795717|ref|XM_014050538.1| 145388 g19298 i0 82.9 62.8719806763285 269 44 65 2 40 307 357 90 Monoraphidium neglectum 40S ribosomal protein S20-1 mRNA blastn 26029 241 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
22109478 22109478 PRJNA437204_P_NODE_56158_length_288_cov_1.153488_g55859_i0 PRJNA437204 56158 288 1.153488 3.32204544 Chlamydomonas reinhardtii 3055 Plants Plants 143 1.54e-29   NTclustered gi|2082242458|ref|XM_001703248.2| 3055 g55859 i0 78.667 2.68055555555556 225 40 77 6 68 288 1374 1154 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_03g172950v5), mRNA blastn 772 143 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
22110031 22110031 PRJNA437204_P_NODE_84978_length_250_cov_0.870056_g84679_i0 PRJNA437204 84978 250 0.870056 2.17514 Choricystis parasitica 41300 Plants Plants 56.5 0.002   NTclustered gi|723446927|ref|NC_025539.1| 41300 g84679 i0 94.595 0.148 37 0 15 1 11 47 68351 68317 Choricystis parasitica culture-collection SAG:17.98 chloroplast, complete genome blastn 37 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Choricystis Choricystis parasitica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;