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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA437204" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 11 ✖

bioproject 1

  • PRJNA437204 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1708061 1708061 PRJNA437204_P_NODE_69662_length_265_cov_1.947917_g69363_i0 PRJNA437204 69662 265 1.947917 5.16198005 Methanobrevibacter ruminantium 83816 Archaea Archaea 344 3.57e-90   NTclustered gi|288541968|gb|CP001719.1| 634498 g69363 i0 90.262 8.86792452830189 267 20 99 4 1 264 2614529 2614266 Methanobrevibacter ruminantium M1, complete genome blastn 2350 344 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter ruminantium
3640406 3640406 PRJNA437204_P_NODE_117843_length_243_cov_0.905882_g117544_i0 PRJNA437204 117843 243 0.905882 2.20129326 Methanobacteriaceae 2159 Archaea Archaea 76.8 1.3e-9   NTclustered gi|952971377|emb|LN734822.1| 2162 g117544 i0 97.727 20.4567901234568 44 1 18 0 197 240 728374 728417 Methanobacterium formicicum genome assembly isolate Mb9, chromosome : I blastn 4971 76.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
7468131 7468131 PRJNA437204_P_NODE_71266_length_263_cov_1.310526_g70967_i0 PRJNA437204 71266 263 1.310526 3.44668338 Methanobrevibacter 2172 Archaea Archaea 481 2.58e-131   NTclustered gi|1294447101|gb|CP017803.1| 2173 g70967 i0 99.62 144.201520912548 263 1 100 0 1 263 265248 264986 Methanobrevibacter smithii strain KB11 chromosome, complete genome blastn 37925 481 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
9359808 9359808 PRJNA437204_P_NODE_112708_length_244_cov_0.900585_g112409_i0 PRJNA437204 112708 244 0.900585 2.1974274 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 351 1.9399999999999998e-92   NTclustered gi|985614202|gb|CP010834.1| 1609968 g112409 i0 92.623 2.90163934426229 244 18 100 0 1 244 218749 218506 Methanobrevibacter sp. YE315, complete genome blastn 708 351 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
9360109 9360109 PRJNA437204_P_NODE_129568_length_234_cov_4.726708_g129269_i0 PRJNA437204 129568 234 4.726708 11.06049672 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 340 3.989999999999999e-89   NTclustered gi|985614202|gb|CP010834.1| 1609968 g129269 i0 92.797 12.4957264957265 236 15 100 2 1 234 1671767 1671532 Methanobrevibacter sp. YE315, complete genome blastn 2924 340 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
10017912 10017912 PRJNA437204_P_NODE_37748_length_330_cov_4.688716_g37449_i0 PRJNA437204 37748 330 4.688716 15.4727628 Methanobrevibacter 2172 Archaea Archaea 601 2.46e-167   NTclustered gi|5725308|emb|AJ009959.1| 66852 g37449 i0 100 105.075757575758 325 0 98 0 6 330 1 325 Methanobrevibacter sp. NT7, 16S rRNA gene, partial blastn 34675 604 0.995033112582781 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
10636186 10636186 PRJNA437204_P_NODE_26809_length_370_cov_2.838384_g26510_i0 PRJNA437204 26809 370 2.838384 10.5020208 Methanosphaera sp. BMS 1789762 Archaea Archaea 667 0   NTclustered gi|1409374143|gb|CP014213.1| 1789762 g26510 i0 99.191 45.8135135135135 371 2 100 1 1 370 2067180 2066810 Methanosphaera sp. BMS chromosome, complete genome blastn 16951 667 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. BMS
10636717 10636717 PRJNA437204_P_NODE_52769_length_294_cov_2.484163_g52470_i0 PRJNA437204 52769 294 2.484163 7.30343922 Methanosphaera sp. BMS 1789762 Archaea Archaea 499 8.099999999999998e-137   NTclustered gi|1409374143|gb|CP014213.1| 1789762 g52470 i0 97.279 11.7517006802721 294 8 100 0 1 294 1090855 1090562 Methanosphaera sp. BMS chromosome, complete genome blastn 3455 499 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. BMS
12569026 12569026 PRJNA437204_P_NODE_7770_length_595_cov_1.429119_g7475_i0 PRJNA437204 7770 595 1.429119 8.50325805 Methanobrevibacter 2172 Archaea Archaea 1066 0   NTclustered gi|1651227316|emb|LR590664.1| 2173 g7475 i0 98.992 105.678991596639 595 6 100 0 1 595 11 605 Methanobrevibacter smithii partial 16S rRNA gene, strain C2 CSUR P5816 blastn 62879 1066 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
19558698 19558698 PRJNA437204_P_NODE_52276_length_295_cov_15.873874_g51977_i0 PRJNA437204 52276 295 15.873874 46.8279283 Methanobrevibacter olleyae 294671 Archaea Archaea 401 2.3599999999999993e-107   NTclustered gi|998157363|gb|CP014265.1| 294671 g51977 i0 91.186 6.34237288135593 295 26 100 0 1 295 497420 497714 Methanobrevibacter olleyae strain YLM1 chromosome, complete genome blastn 1871 401 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter olleyae
22109392 22109392 PRJNA437204_P_NODE_51338_length_297_cov_21.754464_g51039_i0 PRJNA437204 51338 297 21.754464 64.61075808 Methanobrevibacter ruminantium 83816 Archaea Archaea 333 8.8e-87   NTclustered gi|288541968|gb|CP001719.1| 634498 g51039 i0 86.869 3.57575757575758 297 39 100 0 1 297 1064333 1064629 Methanobrevibacter ruminantium M1, complete genome blastn 1062 333 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter ruminantium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;