RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA437204" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA437204 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11911628 11911628 PRJNA437204_P_NODE_5730_length_670_cov_1.144054_g5440_i0 PRJNA437204 5730 670 1.144054 7.6651618 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 62.1 1.11e-4   NTclustered gi|551625712|ref|XM_005792906.1| 280463 g5440 i0 100 0.477611940298507 33 0 5 0 392 424 333 301 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 320 62.1 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
13186093 13186093 PRJNA437204_P_NODE_33471_length_344_cov_1.114391_g33172_i0 PRJNA437204 33471 344 1.114391 3.83350504 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 134 1.13e-26   NTclustered gi|551550727|ref|XM_005762801.1| 280463 g33172 i0 80.925 0.502906976744186 173 29 50 4 120 290 10874 10704 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 173 134 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
24041588 24041588 PRJNA437204_P_NODE_37119_length_332_cov_2.073359_g36820_i0 PRJNA437204 37119 332 2.073359 6.88355188 Viridiplantae 33090 Haptophyta other_Eukaryota 307 6.050000000000001e-79   NTclustered gi|551613833|ref|XM_005787831.1| 280463 g36820 i0 84.112 58.9969879518072 321 47 96 4 12 330 48 366 Emiliania huxleyi CCMP1516 putative EF-1 alpha/Tu like protein (EFG1), mRNA blastn 19587 307 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;