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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA437204" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 12 ✖

bioproject 1

  • PRJNA437204 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5536011 5536011 PRJNA437204_P_NODE_27005_length_369_cov_2.824324_g26706_i0 PRJNA437204 27005 369 2.824324 10.42175556 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 126 2.0399999999999994e-24   NTclustered gi|470375091|ref|XM_004333111.1| 1257118 g26706 i0 84.848 2.91056910569106 132 12 36 6 46 176 1871 1747 Acanthamoeba castellanii str. Neff high molecular weight heat shock protein (ACA1_387860), partial mRNA blastn 1074 126 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5537216 5537216 PRJNA437204_P_NODE_89365_length_249_cov_0.875000_g89066_i0 PRJNA437204 89365 249 0.875 2.17875 Acytostelium subglobosum 361139 Evosea other_Eukaryota 54.7 0.006   NTclustered gi|831786496|ref|XM_012902674.1| 1410327 g89066 i0 100 3.26506024096386 29 0 12 0 68 96 260 232 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 813 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
6809404 6809404 PRJNA437204_P_NODE_111626_length_244_cov_0.900585_g111327_i0 PRJNA437204 111626 244 0.900585 2.1974274 Cavenderia fasciculata 261658 Evosea other_Eukaryota 113 9.95e-21   NTclustered gi|470267945|ref|XM_004362151.1| 261658 g111327 i0 84.483 0.475409836065574 116 16 47 2 79 193 738 852 Cavenderia fasciculata NAD-dependent glutamate dehydrogenase (glud1), partial mRNA blastn 116 113 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
8085339 8085339 PRJNA437204_P_NODE_15687_length_451_cov_2.296296_g15388_i0 PRJNA437204 15687 451 2.296296 10.35629496 Paramoeba branchiphila 308475 Discosea other_Eukaryota 381 4.909999999999999e-101   NTclustered gi|226347442|gb|FJ807261.1| 308475 g15388 i0 82.103 89.0088691796009 447 78 99 2 5 450 669 224 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 40143 381 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
8086025 8086025 PRJNA437204_P_NODE_51287_length_298_cov_1.017778_g50988_i0 PRJNA437204 51287 298 1.017778 3.03297844 Amoebozoa sp. 1892891 Root_unresolved Root_unresolved 370 6.73e-98   NTclustered gi|2651357789|gb|PP174304.1| 1892891 g50988 i0 89.109 11.4295302013423 303 26 100 3 1 298 3689 3389 Amoebozoa sp. isolate 114_WLI small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3406 370 1 Eukaryota Amoebozoa             Amoebozoa sp.
11911302 11911302 PRJNA437204_P_NODE_41030_length_322_cov_0.919679_g40731_i0 PRJNA437204 41030 322 0.919679 2.96136638 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 283 9.85e-72   NTclustered gi|470484649|ref|XM_004344039.1| 1257118 g40731 i0 83.121 25.3633540372671 314 49 97 4 9 320 6630 6319 Acanthamoeba castellanii str. Neff PremRNA processing splicing factor 8, putative (ACA1_054320), partial mRNA blastn 8167 283 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14460378 14460378 PRJNA437204_P_NODE_105512_length_246_cov_0.890173_g105213_i0 PRJNA437204 105512 246 0.890173 2.18982558 Dictyostelium discoideum 44689 Evosea other_Eukaryota 62.1 3.69e-5   NTclustered gi|66823694|ref|XM_640110.1| 352472 g105213 i0 97.222 0.146341463414634 36 1 15 0 56 91 417 452 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0272148) mRNA, complete cds blastn 36 62.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
14462168 14462168 PRJNA437204_P_NODE_84272_length_250_cov_0.870056_g83973_i0 PRJNA437204 84272 250 0.870056 2.17514 Acytostelium subglobosum 361139 Evosea other_Eukaryota 54.7 0.006   NTclustered gi|831758352|ref|XM_012893863.1| 1410327 g83973 i0 100 0.116 29 0 12 0 119 147 185 157 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 29 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
15734277 15734277 PRJNA437204_P_NODE_109413_length_245_cov_0.895349_g109114_i0 PRJNA437204 109413 245 0.895349 2.19360505 Entamoeba histolytica 5759 Evosea other_Eukaryota 241 4.400000000000001e-59   NTclustered gi|511084914|dbj|AK419690.1| 5759 g109114 i0 85.232 96.7428571428571 237 31 96 4 2 236 267 33 Entamoeba histolytica cDNA clone: Xeh-005H14, actin, putative, complete cds, strain: HM-1:IMSS blastn 23702 241 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
15734922 15734922 PRJNA437204_P_NODE_25993_length_374_cov_2.431894_g25694_i0 PRJNA437204 25993 374 2.4318939999999998 9.09528356 Didymium iridis 5793 Evosea other_Eukaryota 215 4.29e-51   NTclustered gi|2687|emb|X60210.1| 5793 g25694 i0 89.08 1.51336898395722 174 17 46 2 9 180 5125 5298 D.iridis LSU rRNA gene blastn 566 215 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
19558135 19558135 PRJNA437204_P_NODE_24076_length_385_cov_0.987179_g23777_i0 PRJNA437204 24076 385 0.987179 3.80063915 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 209 2.06e-49   NTclustered gi|470416791|ref|XM_004336874.1| 1257118 g23777 i0 81.538 54.7558441558442 260 42 67 6 128 384 49 305 Acanthamoeba castellanii str. Neff ribosomal protein L44, putative (ACA1_325250), partial mRNA blastn 21081 209 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20833246 20833246 PRJNA437204_P_NODE_104457_length_246_cov_0.890173_g104158_i0 PRJNA437204 104457 246 0.890173 2.18982558 Heterostelium album 2086695 Evosea other_Eukaryota 172 1.63e-38   NTclustered gi|1160551744|ref|XM_020571206.1| 670386 g104158 i0 80.342 61.8292682926829 234 41 94 5 13 243 1885 2116 Polysphondylium pallidum PN500 heat shock protein (hspB), partial mRNA blastn 15210 172 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;