RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA436017" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA436017 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4257644 4257644 PRJNA436017_P_NODE_14504_length_218_cov_348.779006_g14206_i0 PRJNA436017 14504 218 348.779006 760.33823308 Candidatus Manganitrophus sp. 2927580 Bacteria Bacteria 237 4.96e-58   NTclustered gi|2449729286|gb|CP114553.1| 2927580 g14206 i0 86.574 269.110091743119 216 27 99 2 1 215 491452 491666 MAG: Candidatus Manganitrophus sp. isolate GAC1 chromosome, complete genome blastn 58666 237 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Candidatus Troglogloeales Candidatus Manganitrophaceae Candidatus Manganitrophus Candidatus Manganitrophus sp.
23382782 23382782 PRJNA436017_P_NODE_10879_length_260_cov_1.748879_g10581_i0 PRJNA436017 10879 260 1.748879 4.5470854 Nitrospira sp. 70125 Bacteria Bacteria 75 5.06e-9   NTclustered gi|2511635996|gb|CP126122.1| 70125 g10581 i0 86.957 49.9653846153846 69 6 26 3 60 126 751601 751534 MAG: Nitrospira sp. isolate bin_005 chromosome blastn 12991 75 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;