RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA436017" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA436017 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18282492 18282492 PRJNA436017_P_NODE_27055_length_157_cov_1.266667_g26757_i0 PRJNA436017 27055 157 1.266667 1.98866719 Rhabditis sp. 35561 Nematoda Nematoda 268 1.1799999999999998e-67   NTclustered gi|2258051719|gb|ON811602.1| 35561 g26757 i0 97.452 23.3375796178344 157 4 100 0 1 157 113 269 Rhabditis sp. isolate NC4_Cox1 cytochrome c oxidase subunit I (COX1) gene, partial cds; mitochondrial blastn 3664 268 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditis Rhabditis sp.
25315231 25315231 PRJNA436017_P_NODE_25860_length_160_cov_1.577236_g25562_i0 PRJNA436017 25860 160 1.577236 2.5235776 Caenorhabditis 6237 Nematoda Nematoda 100 4.67e-17   NTclustered gi|993038|gb|U25698.1|CEU25698 6239 g25562 i0 95.238 2.55625 63 3 39 0 57 119 806 744 Caenorhabditis elegans CCT chaperonin subunit 5 (cct-5) mRNA, complete cds blastn 409 100 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;