RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA436017" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA436017 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5534333 5534333 PRJNA436017_P_NODE_12365_length_240_cov_3.413793_g12067_i0 PRJNA436017 12365 240 3.413793 8.1931032 Pantachogon haeckeli 168769 Cnidaria other_Eukaryota 145 3.46e-30   NTclustered gi|270271848|gb|GQ120079.1| 168769 g12067 i0 82.249 68.325 169 28 70 2 1 168 535 702 Pantachogon haeckeli cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial blastn 16398 145 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Trachymedusae Rhopalonematidae Pantachogon Pantachogon haeckeli
10634733 10634733 PRJNA436017_P_NODE_25769_length_160_cov_4.024390_g25471_i0 PRJNA436017 25769 160 4.02439 6.439024 Stylobates loisetteae 2601840 Cnidaria other_Eukaryota 169 1.26e-37   NTclustered gi|1720101249|gb|MN266882.1| 2601840 g25471 i0 86.452 9.7125 155 20 96 1 7 160 2935 2781 Stylobates loisetteae isolate Stylo large subunit ribosomal RNA gene, partial sequence blastn 1554 169 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Stylobates Stylobates loisetteae
18940478 18940478 PRJNA436017_P_NODE_15135_length_213_cov_1.943182_g14837_i0 PRJNA436017 15135 213 1.943182 4.13897766 Rhizostomeae 37535 Cnidaria other_Eukaryota 132 2.34e-26   NTclustered gi|2862235116|gb|PQ647263.1| 880218 g14837 i0 89.091 47.4647887323944 110 7 51 5 17 124 6892 6786 Cephea cephea isolate AGC18069 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10110 132 1 Eukaryota Opisthokonta Metazoa Cnidaria Scyphozoa Rhizostomeae Cepheidae Cephea Cephea cephea
22107427 22107427 PRJNA436017_P_NODE_24618_length_164_cov_2.070866_g24320_i0 PRJNA436017 24618 164 2.070866 3.39622024 Clytia sp. JRH-2014 1483203 Cnidaria other_Eukaryota 159 7.84e-35   NTclustered gi|608606329|gb|KF962101.1| 1483203 g24320 i0 86.486 90.9939024390244 148 16 89 4 1 146 282 137 Clytia sp. JRH-2014 voucher XMCL1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial blastn 14923 159 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Leptothecata Clytiidae Clytia Clytia sp. JRH-2014

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;