RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA436017" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA436017 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8084201 8084201 PRJNA436017_P_NODE_29267_length_151_cov_1.210526_g28969_i0 PRJNA436017 29267 151 1.210526 1.82789426 Rhizophydiales sp. 2011922 Fungi Fungi 150 4.2499999999999996e-32   NTclustered gi|1866582663|gb|MT730838.1| 2011922 g28969 i0 88.372 112.867549668874 129 9 85 2 23 151 4152 4030 Rhizophydiales sp. isolate JEL0830 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17043 150 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales     Rhizophydiales sp.
10634524 10634524 PRJNA436017_P_NODE_13489_length_228_cov_1.633508_g13191_i0 PRJNA436017 13489 228 1.633508 3.72439824 Gromochytrium mamkaevae 1486924 Fungi Fungi 97.1 9.26e-16   NTclustered gi|612507318|gb|KF586842.1| 1486924 g13191 i0 96.552 8.23245614035088 58 2 25 0 7 64 6188 6131 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1877 97.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
13184387 13184387 PRJNA436017_P_NODE_1831_length_700_cov_7.224736_g1604_i0 PRJNA436017 1831 700 7.224736 50.573152 Spizellomyces punctatus 109760 Fungi Fungi 65.8 8.98e-6   NTclustered gi|1027029571|ref|XR_001677165.1| 645134 g1604 i0 89.286 1.70142857142857 56 1 12 3 272 327 2853 2803 Spizellomyces punctatus DAOM BR117 28S ribosomal RNA (SPPG_11007), partial rRNA blastn 1191 65.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
20215194 20215194 PRJNA436017_P_NODE_10776_length_261_cov_8.571429_g10478_i0 PRJNA436017 10776 261 8.571429 22.37142969 Alphamycetaceae 1167809 Fungi Fungi 200 8.029999999999999e-47   NTclustered gi|2897839614|gb|CP161932.1| 109871 g10478 i0 93.333 57.5900383141762 135 9 52 0 125 259 1053741 1053607 Batrachochytrium dendrobatidis strain JEL423 chromosome 10 blastn 15031 202 0.99009900990099 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;