RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA436017" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA436017 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2364574 2364574 PRJNA436017_P_NODE_9762_length_277_cov_2.691667_g9464_i0 PRJNA436017 9762 277 2.691667 7.45591759 Lotharella 74819 SAR_Eukaryotes SAR_Eukaryotes 89.8 1.94e-13   NTclustered gi|220983373|dbj|AB453009.1| 74820 g9464 i0 83 8.91696750902527 100 16 36 1 179 277 3094 2995 Lotharella vacuolata gene for nuclear large subunit ribosomal RNA, partial sequence blastn 2470 89.8 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Lotharella Lotharella vacuolata
5534307 5534307 PRJNA436017_P_NODE_105_length_2017_cov_199.068687_g82_i0 PRJNA436017 105 2017 199.068687 4015.21541679 Rosculus piscicus 2231164 SAR_Eukaryotes SAR_Eukaryotes 1644 0   NTclustered gi|1402550472|gb|MH488758.1| 2231164 g82 i0 81.881 29.4243926623699 2042 286 99 66 15 2017 3 1999 Rosculus piscicus isolate GS5C small subunit ribosomal RNA gene, partial sequence blastn 59349 1644 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus piscicus
10634520 10634520 PRJNA436017_P_NODE_13149_length_231_cov_3.432990_g12851_i0 PRJNA436017 13149 231 3.43299 7.9302069 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 150 7.109999999999999e-32   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g12851 i0 79.221 19.2164502164502 231 37 99 9 4 231 4021 3799 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 4439 150 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
24040854 24040854 PRJNA436017_P_NODE_27059_length_157_cov_1.258333_g26761_i0 PRJNA436017 27059 157 1.258333 1.97558281 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 217 4.339999999999999e-52   NTclustered gi|1915674406|emb|LR868025.1| 175275 g26761 i0 91.411 101.03821656051 163 7 100 3 1 157 138 299 uncultured Cercozoa partial 18S rRNA gene blastn 15863 217 1 Eukaryota Sar   Cercozoa         uncultured Cercozoa
24657248 24657248 PRJNA436017_P_NODE_3080_length_532_cov_4.349495_g2804_i0 PRJNA436017 3080 532 4.349495 23.1393134 Helkesimastix marina 645121 SAR_Eukaryotes SAR_Eukaryotes 850 0   NTclustered gi|237687967|gb|FJ410915.1| 645121 g2804 i0 97.421 41.0225563909774 504 3 93 2 1 495 503 1 Helkesimastix sp. ATCC 50328 18S ribosomal RNA gene, partial sequence blastn 21824 850 1 Eukaryota Sar   Cercozoa     Helkesimastigidae Helkesimastix Helkesimastix marina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;