RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA436017" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJNA436017 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7467195 7467195 PRJNA436017_P_NODE_7446_length_325_cov_6.295139_g7149_i0 PRJNA436017 7446 325 6.295139 20.45920175 Eukaryota 2759 Plants Plants 464 3.3099999999999995e-126   NTclustered gi|1714003650|gb|MN243923.1| 3079 g7149 i0 92.901 99.6184615384615 324 15 99 3 2 325 821 506 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 32376 464 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
9358831 9358831 PRJNA436017_P_NODE_18808_length_189_cov_1.171053_g18510_i0 PRJNA436017 18808 189 1.171053 2.21329017 Chaetophoropsis cf. attenuata FACHB-2291 2725790 Plants Plants 172 1.19e-38   NTclustered gi|1831430457|gb|MN701986.1| 2725790 g18510 i0 83.77 136.772486772487 191 21 97 8 6 189 4604 4417 Chaetophoropsis cf. attenuata FACHB-2291 chloroplast, complete genome blastn 25850 172 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chaetophorales Chaetophoraceae Chaetophoropsis Chaetophoropsis cf. attenuata FACHB-2291
11292298 11292298 PRJNA436017_P_NODE_7809_length_316_cov_13.899642_g7512_i0 PRJNA436017 7809 316 13.899642 43.92286872 Eukaryota 2759 Plants Plants 584 2.359999999999999e-162   NTclustered gi|1714003650|gb|MN243923.1| 3079 g7512 i0 100 99.9335443037975 316 0 100 0 1 316 821 506 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 31579 584 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
18940462 18940462 PRJNA436017_P_NODE_10555_length_264_cov_6632.859031_g10257_i0 PRJNA436017 10555 264 6632.859031 17510.74784184 root 1 Root_unresolved Root_unresolved 416 7.419999999999999e-112   NTclustered gi|2507491536|dbj|LC749599.1| 51714 g10257 i0 95.113 100.912878787879 266 10 100 3 1 264 112046 111782 Volvox africanus NIES-4468 DNA, SD-like region blastn 26641 416 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox africanus
21490889 21490889 PRJNA436017_P_NODE_29177_length_151_cov_1.368421_g28879_i0 PRJNA436017 29177 151 1.368421 2.06631571 root 1 Root_unresolved Root_unresolved 257 2.43e-64   NTclustered gi|1279575454|gb|MF683078.1| 44745 g28879 i0 97.351 81.7615894039735 151 4 100 0 1 151 68 218 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 12346 257 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
24656967 24656967 PRJNA436017_P_NODE_14280_length_220_cov_2.289617_g13982_i0 PRJNA436017 14280 220 2.289617 5.0371574 Polulichloris maxima 2704661 Plants Plants 97.1 8.87e-16   NTclustered gi|2473928686|ref|NC_072905.1| 2704661 g13982 i0 88.608 0.359090909090909 79 9 36 0 54 132 127394 127472 Polulichloris maxima clone L123 chloroplast, complete genome blastn 79 97.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Polulichloris Polulichloris maxima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;