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contig_metadata

26 rows where analysis = "blastn", bioproject = "PRJNA436017" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 26 ✖

bioproject 1

  • PRJNA436017 · 26 ✖

analysis 1

  • blastn · 26 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1705439 1705439 PRJNA436017_P_NODE_11702_length_249_cov_1.613208_g11404_i0 PRJNA436017 11702 249 1.613208 4.01688792 Tychosporium acutostipes 668358 Evosea other_Eukaryota 193 1.27e-44   NTclustered gi|256550195|gb|FJ792703.1| 668358 g11404 i0 89.677 58.9357429718875 155 10 61 3 97 249 160 10 Tychosporium acutostipes strain KE11AL small subunit ribosomal RNA gene, partial sequence blastn 14675 193 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Tychosporium Tychosporium acutostipes
1705677 1705677 PRJNA436017_P_NODE_24042_length_166_cov_1.813953_g23744_i0 PRJNA436017 24042 166 1.813953 3.01116198 Arcyria cinerea 137621 Evosea other_Eukaryota 302 1.2500000000000001e-77   NTclustered gi|2753773265|gb|PP982843.1| 137621 g23744 i0 99.398 97.3915662650602 166 1 100 0 1 166 338 503 Arcyria cinerea voucher TUF135974 small subunit ribosomal RNA gene, partial sequence blastn 16167 302 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria cinerea
1705736 1705736 PRJNA436017_P_NODE_27422_length_156_cov_1.277311_g27124_i0 PRJNA436017 27422 156 1.277311 1.99260516 Paravannella minima 1443144 Discosea other_Eukaryota 115 1.62e-21   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g27124 i0 88.421 16.2051282051282 95 11 61 0 62 156 2845 2751 Paravannella minima mitochondrion, complete genome blastn 2528 115 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
1705903 1705903 PRJNA436017_P_NODE_8742_length_296_cov_1.613900_g8444_i0 PRJNA436017 8742 296 1.6139 4.777144 Tychosporium acutostipes 668358 Evosea other_Eukaryota 172 2.0199999999999998e-38   NTclustered gi|2467140639|dbj|LC720133.1| 668358 g8444 i0 90.152 16.0067567567568 132 13 45 0 4 135 926 795 Tychosporium acutostipes YIP-60 gene for 18S rRNA, partial sequence blastn 4738 172 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Tychosporium Tychosporium acutostipes
2364427 2364427 PRJNA436017_P_NODE_1242_length_843_cov_4.050868_g1059_i0 PRJNA436017 1242 843 4.050868 34.14881724 root 1 Root_unresolved Root_unresolved 161 1.3499999999999999e-34   NTclustered gi|292559443|ref|NC_013986.1| 5778 g1059 i0 82.609 40.0166073546856 184 30 22 2 334 516 27349 27531 Hartmannella vermiformis mitochondrion, complete genome blastn 33734 161 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
4257963 4257963 PRJNA436017_P_NODE_4164_length_453_cov_4.016827_g3873_i0 PRJNA436017 4164 453 4.016827 18.19622631 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 634 3.429999999999999e-177   NTclustered gi|659103923|gb|KJ569725.1| 1512276 g3873 i0 91.957 60.2185430463576 460 26 99 9 1 452 666 1122 Cochliopodium kieliense clone 9601 18S ribosomal RNA gene, partial sequence blastn 27279 634 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
5534693 5534693 PRJNA436017_P_NODE_5065_length_405_cov_2.203804_g4769_i0 PRJNA436017 5065 405 2.203804 8.9254062 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 713 0   NTclustered gi|354720325|gb|HQ687484.1| 1105345 g4769 i0 99.491 50.0666666666667 393 1 97 1 1 392 842 1234 Vexillifera bacillipedes strain TIL2 small subunit ribosomal RNA gene, partial sequence blastn 20277 713 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
6192167 6192167 PRJNA436017_P_NODE_6585_length_348_cov_62.331190_g6288_i0 PRJNA436017 6585 348 62.33119 216.9125412 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 89.8 2.51e-13   NTclustered gi|300078498|gb|GU001160.1| 5755 g6288 i0 87.342 1.83045977011494 79 9 22 1 271 348 5239 5161 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 637 89.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7467079 7467079 PRJNA436017_P_NODE_14466_length_219_cov_1.461538_g14168_i0 PRJNA436017 14466 219 1.461538 3.20076822 Planopodium 2823620 Discosea other_Eukaryota 405 1.29e-108   NTclustered gi|330902850|gb|JF298244.1| 2773111 g14168 i0 100 58.6164383561644 219 0 100 0 1 219 790 1008 Ovalopodium desertum clone 3702 18S ribosomal RNA gene, partial sequence blastn 12837 405 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Planopodium Planopodium desertum
8083866 8083866 PRJNA436017_P_NODE_11227_length_255_cov_1.894495_g10929_i0 PRJNA436017 11227 255 1.894495 4.83096225 Vannella septentrionalis 197531 Discosea other_Eukaryota 472 1.5e-128   NTclustered gi|300078499|gb|GU001161.1| 197531 g10929 i0 100 75.0039215686274 255 0 100 0 1 255 2716 2970 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 19126 472 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
9359027 9359027 PRJNA436017_P_NODE_3308_length_514_cov_14.930818_g3030_i0 PRJNA436017 3308 514 14.930818 76.74440452 Paramoeba perurans 437603 Discosea other_Eukaryota 313 2.09e-80   NTclustered gi|145386784|gb|EF216909.1| 437603 g3030 i0 81.606 38.3657587548638 386 63 74 8 1 382 38 419 Neoparamoeba perurans strain GD-HAC/1 28S large subunit ribosomal RNA gene, partial sequence blastn 19720 313 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
10634687 10634687 PRJNA436017_P_NODE_23029_length_170_cov_1.428571_g22731_i0 PRJNA436017 23029 170 1.428571 2.4285707 Ripella sp. 805 1217113 Discosea other_Eukaryota 259 7.8e-65   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g22731 i0 98.639 72.5470588235294 147 1 86 1 1 147 60 205 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 12333 259 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
11909442 11909442 PRJNA436017_P_NODE_14770_length_216_cov_2.033520_g14472_i0 PRJNA436017 14770 216 2.03352 4.3924032 Dictyostelium discoideum 44689 Evosea other_Eukaryota 250 6.3e-62   NTclustered gi|66813933|ref|XM_636054.1| 352472 g14472 i0 87.5 99.1388888888889 216 27 100 0 1 216 793 578 Dictyostelium discoideum AX4 hypothetical protein (act7) mRNA, complete cds blastn 21414 250 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
13184273 13184273 PRJNA436017_P_NODE_11971_length_245_cov_6.072115_g11673_i0 PRJNA436017 11971 245 6.072115 14.87668175 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 348 2.5200000000000005e-91   NTclustered gi|659103927|gb|KJ569727.1| 1512276 g11673 i0 95.089 28.334693877551 224 5 89 6 27 245 4 226 Cochliopodium kieliense clone 9611 18S ribosomal RNA gene, partial sequence blastn 6942 348 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
13184548 13184548 PRJNA436017_P_NODE_27311_length_156_cov_1.579832_g27013_i0 PRJNA436017 27311 156 1.579832 2.46453792 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 141 2.67e-29   NTclustered gi|511487963|gb|JX898537.1| 1260765 g27013 i0 93.684 6.91666666666667 95 5 61 1 1 95 283 376 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 1079 141 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
15733282 15733282 PRJNA436017_P_NODE_15393_length_211_cov_1.758621_g15095_i0 PRJNA436017 15393 211 1.758621 3.71069031 Spumochlamys bryora 675832 Tubulinea other_Eukaryota 390 3.459999999999999e-104   NTclustered gi|259595677|gb|FJ705341.1| 675832 g15095 i0 100 34.3507109004739 211 0 100 0 1 211 374 164 Spumochlamys bryora clone 1901 18S ribosomal RNA gene, partial sequence blastn 7248 390 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys bryora
17008188 17008188 PRJNA436017_P_NODE_29814_length_150_cov_0.973451_g29516_i0 PRJNA436017 29814 150 0.973451 1.4601765 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 250 4.04e-62   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g29516 i0 96.689 105.7 151 4 100 1 1 150 34047 34197 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 15855 250 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
17008250 17008250 PRJNA436017_P_NODE_594_length_1142_cov_45.026244_g488_i0 PRJNA436017 594 1142 45.026244 514.19970648 Acanthamoeba comandoni 65659 Discosea other_Eukaryota 150 4.01e-31   NTclustered gi|28194600|gb|AF479544.1| 65659 g488 i0 78.333 10.4474605954466 240 47 21 4 197 434 927 691 Acanthamoeba comandoni strain ATCC 30135 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 11931 150 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba comandoni
17666697 17666697 PRJNA436017_P_NODE_27894_length_155_cov_0.932203_g27596_i0 PRJNA436017 27894 155 0.932203 1.44491465 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 287 3.21e-73   NTclustered gi|399764274|gb|JQ271785.1| 1215994 g27596 i0 100 12.0709677419355 155 0 100 0 1 155 500 346 Tubulinea group 04 sp. BCHM5 18S ribosomal RNA gene, partial sequence blastn 1871 287 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. BCHM5
18282665 18282665 PRJNA436017_P_NODE_9655_length_279_cov_2.061983_g9357_i0 PRJNA436017 9655 279 2.061983 5.75293257 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 444 3.63e-120   NTclustered gi|292559443|ref|NC_013986.1| 5778 g9357 i0 95.341 21.8853046594982 279 13 100 0 1 279 26264 26542 Hartmannella vermiformis mitochondrion, complete genome blastn 6106 444 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20215220 20215220 PRJNA436017_P_NODE_15496_length_210_cov_2.184971_g15198_i0 PRJNA436017 15496 210 2.184971 4.5884391 Vannella 95228 Discosea other_Eukaryota 359 9.7e-95   NTclustered gi|270381377|emb|FN598227.1| 544561 g15198 i0 98.522 92.3047619047619 203 3 97 0 8 210 1045 843 Uncultured Vannellidae partial 18S rRNA gene, clone BIO1_A11 blastn 19384 359 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae   uncultured Vannellidae
20215348 20215348 PRJNA436017_P_NODE_7976_length_313_cov_2.126812_g7679_i0 PRJNA436017 7976 313 2.126812 6.65692156 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 551 2.369999999999999e-152   NTclustered gi|300078496|gb|GU001158.1| 5778 g7679 i0 98.403 76.6421725239617 313 5 100 0 1 313 922 1234 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 23989 551 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20832375 20832375 PRJNA436017_P_NODE_17917_length_194_cov_0.980892_g17619_i0 PRJNA436017 17917 194 0.980892 1.90293048 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 311 2.5000000000000004e-80   NTclustered gi|909719647|gb|KT185627.1| 5778 g17619 i0 95.408 28.0051546391753 196 7 100 1 1 194 26819 27014 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 5433 311 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20832477 20832477 PRJNA436017_P_NODE_23197_length_169_cov_2.166667_g22899_i0 PRJNA436017 23197 169 2.166667 3.66166723 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 279 5.95e-71   NTclustered gi|909719645|gb|KT185625.1| 5778 g22899 i0 96.45 1.92899408284024 169 6 100 0 1 169 7056 6888 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 326 279 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23382939 23382939 PRJNA436017_P_NODE_1899_length_686_cov_10.326656_g1668_i0 PRJNA436017 1899 686 10.326656 70.84086016 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 1214 0   NTclustered gi|354720325|gb|HQ687484.1| 1105345 g1668 i0 98.688 50.902332361516 686 5 100 2 1 686 692 11 Vexillifera bacillipedes strain TIL2 small subunit ribosomal RNA gene, partial sequence blastn 34919 1214 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
24657208 24657208 PRJNA436017_P_NODE_27460_length_156_cov_1.151261_g27162_i0 PRJNA436017 27460 156 1.151261 1.79596716 Spumochlamys bryora 675832 Tubulinea other_Eukaryota 261 1.96e-65   NTclustered gi|259595677|gb|FJ705341.1| 675832 g27162 i0 96.795 67.4807692307692 156 5 100 0 1 156 1065 1220 Spumochlamys bryora clone 1901 18S ribosomal RNA gene, partial sequence blastn 10527 261 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys bryora

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;